miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 2351 0.66 0.926604
Target:  5'- -cCCUGGGccGCGucuCCGCCCCGcccgccgAGGc -3'
miRNA:   3'- guGGACCUucUGCu--GGCGGGGCa------UCC- -5'
14597 3' -57.6 NC_003521.1 + 5827 0.67 0.910472
Target:  5'- gGCCaGGggGACcgcuaccgcuggGACCGCa-CGUAGGc -3'
miRNA:   3'- gUGGaCCuuCUG------------CUGGCGggGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 11762 0.7 0.759265
Target:  5'- cCGCCUGGguGACuGCCuucguCCUCGUGGGg -3'
miRNA:   3'- -GUGGACCuuCUGcUGGc----GGGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 15849 0.67 0.921441
Target:  5'- --gCUGGuGGGCGACCGCUaCG-AGGa -3'
miRNA:   3'- gugGACCuUCUGCUGGCGGgGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 16933 0.69 0.827705
Target:  5'- uCACCaGGA--ACGACCGCCguuaCCGUcGGGg -3'
miRNA:   3'- -GUGGaCCUucUGCUGGCGG----GGCA-UCC- -5'
14597 3' -57.6 NC_003521.1 + 17705 0.66 0.926604
Target:  5'- -uCCUGGugcugcgcGAGACGGCCGCcauCCCGcAGa -3'
miRNA:   3'- guGGACC--------UUCUGCUGGCG---GGGCaUCc -5'
14597 3' -57.6 NC_003521.1 + 18081 0.74 0.568442
Target:  5'- gACCUGG-AGACGACgGCCgCG-GGGa -3'
miRNA:   3'- gUGGACCuUCUGCUGgCGGgGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 18488 0.67 0.898654
Target:  5'- uCGCCUGGAGGA--GCUGCCCgUGUGc- -3'
miRNA:   3'- -GUGGACCUUCUgcUGGCGGG-GCAUcc -5'
14597 3' -57.6 NC_003521.1 + 23944 0.66 0.931552
Target:  5'- gGCCUGGAugccuGGAUGucCCGCUCCacGGGc -3'
miRNA:   3'- gUGGACCU-----UCUGCu-GGCGGGGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 27512 0.66 0.945112
Target:  5'- ----cGGggGGCGugCGgCCCG-AGGc -3'
miRNA:   3'- guggaCCuuCUGCugGCgGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 29893 0.78 0.359979
Target:  5'- gCACCUGGGcgacGACGACCGacgaCCCGUGGc -3'
miRNA:   3'- -GUGGACCUu---CUGCUGGCg---GGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 30929 0.67 0.898654
Target:  5'- -uCCUGGGgcAGuCG-CCGUgCCGUAGGu -3'
miRNA:   3'- guGGACCU--UCuGCuGGCGgGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 32992 0.68 0.86553
Target:  5'- -cCCUGGcGGAUGAa-GCCCCGcAGGc -3'
miRNA:   3'- guGGACCuUCUGCUggCGGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 35097 0.69 0.819636
Target:  5'- uGCC-GGAuucgAGGCGGCCcgaGCCCCGUAa- -3'
miRNA:   3'- gUGGaCCU----UCUGCUGG---CGGGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 37424 0.71 0.731722
Target:  5'- gGCCUGGGAGGCGugGCCGggaCCUG-AGGc -3'
miRNA:   3'- gUGGACCUUCUGC--UGGCg--GGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 43631 0.67 0.921441
Target:  5'- gACgaGGAGGaggcgGCGGCCGCCgCCGgagagcagagAGGa -3'
miRNA:   3'- gUGgaCCUUC-----UGCUGGCGG-GGCa---------UCC- -5'
14597 3' -57.6 NC_003521.1 + 44818 0.67 0.904668
Target:  5'- gGCC-GGAGGGCGACacgccacaGCUCC-UGGGg -3'
miRNA:   3'- gUGGaCCUUCUGCUGg-------CGGGGcAUCC- -5'
14597 3' -57.6 NC_003521.1 + 45531 0.67 0.892432
Target:  5'- gACUUGGA--GCGGgCGCCCCGUcAGcGg -3'
miRNA:   3'- gUGGACCUucUGCUgGCGGGGCA-UC-C- -5'
14597 3' -57.6 NC_003521.1 + 49814 0.66 0.931552
Target:  5'- gGCCUGGAuGA-GGCUGCCCaCGUc-- -3'
miRNA:   3'- gUGGACCUuCUgCUGGCGGG-GCAucc -5'
14597 3' -57.6 NC_003521.1 + 51430 0.68 0.858321
Target:  5'- --aCUGG-AGAUGACgGCuCCCGUGGu -3'
miRNA:   3'- gugGACCuUCUGCUGgCG-GGGCAUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.