miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 215514 1.09 0.003765
Target:  5'- cCACCUGGAAGACGACCGCCCCGUAGGu -3'
miRNA:   3'- -GUGGACCUUCUGCUGGCGGGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 90557 0.78 0.33788
Target:  5'- aCACCUGGGaggAGugGguACCGCCCCcUAGGu -3'
miRNA:   3'- -GUGGACCU---UCugC--UGGCGGGGcAUCC- -5'
14597 3' -57.6 NC_003521.1 + 29893 0.78 0.359979
Target:  5'- gCACCUGGGcgacGACGACCGacgaCCCGUGGc -3'
miRNA:   3'- -GUGGACCUu---CUGCUGGCg---GGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 155316 0.77 0.407118
Target:  5'- -uCCUGGGugAGACGACCGCggguCCCGgcGGg -3'
miRNA:   3'- guGGACCU--UCUGCUGGCG----GGGCauCC- -5'
14597 3' -57.6 NC_003521.1 + 146811 0.76 0.440616
Target:  5'- gACCUGGAcGACGAgCGCUCCGccugucUGGGg -3'
miRNA:   3'- gUGGACCUuCUGCUgGCGGGGC------AUCC- -5'
14597 3' -57.6 NC_003521.1 + 220214 0.76 0.46674
Target:  5'- aCAUCUGGAAGAUGGCCGCCgucaggCUGUuGGc -3'
miRNA:   3'- -GUGGACCUUCUGCUGGCGG------GGCAuCC- -5'
14597 3' -57.6 NC_003521.1 + 168048 0.74 0.549401
Target:  5'- aCAUCUGGuAGACGcCCGUCUCGUGGu -3'
miRNA:   3'- -GUGGACCuUCUGCuGGCGGGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 18081 0.74 0.568442
Target:  5'- gACCUGG-AGACGACgGCCgCG-GGGa -3'
miRNA:   3'- gUGGACCuUCUGCUGgCGGgGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 72667 0.73 0.60696
Target:  5'- gGCCUGGgcGGCGccccuauuCCGCCCCGUc-- -3'
miRNA:   3'- gUGGACCuuCUGCu-------GGCGGGGCAucc -5'
14597 3' -57.6 NC_003521.1 + 148418 0.73 0.626345
Target:  5'- aGCCaUGGugcGGGCGGCCGCgCCGgcGGc -3'
miRNA:   3'- gUGG-ACCu--UCUGCUGGCGgGGCauCC- -5'
14597 3' -57.6 NC_003521.1 + 150466 0.72 0.645745
Target:  5'- -gUCUGGGGcGGCGAgCGCCUgGUGGGg -3'
miRNA:   3'- guGGACCUU-CUGCUgGCGGGgCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 121902 0.72 0.655434
Target:  5'- uGgCUGGGgcAGAUGGcCCGgCCCGUGGGg -3'
miRNA:   3'- gUgGACCU--UCUGCU-GGCgGGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 215602 0.72 0.655434
Target:  5'- aGCCUGGGAGggagauacACGGCCGUCuuGUcGGu -3'
miRNA:   3'- gUGGACCUUC--------UGCUGGCGGggCAuCC- -5'
14597 3' -57.6 NC_003521.1 + 86896 0.72 0.665106
Target:  5'- -uCCUGGAcgaaguGGugGAgaaCGCCCCGUGGa -3'
miRNA:   3'- guGGACCU------UCugCUg--GCGGGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 76760 0.72 0.69395
Target:  5'- gACCUccGAGGCGACCGUCgCCGUGGc -3'
miRNA:   3'- gUGGAccUUCUGCUGGCGG-GGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 122420 0.71 0.71296
Target:  5'- gACCcGGAcgcGACGACCacaacGCCCgGUGGGa -3'
miRNA:   3'- gUGGaCCUu--CUGCUGG-----CGGGgCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 68249 0.71 0.722376
Target:  5'- uCACCUGGcGGuGCGACCGCCgaCCccGGGa -3'
miRNA:   3'- -GUGGACCuUC-UGCUGGCGG--GGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 193212 0.71 0.722376
Target:  5'- cCGCCUGGAcGAUGGCgGCCaaGUcGGg -3'
miRNA:   3'- -GUGGACCUuCUGCUGgCGGggCAuCC- -5'
14597 3' -57.6 NC_003521.1 + 37424 0.71 0.731722
Target:  5'- gGCCUGGGAGGCGugGCCGggaCCUG-AGGc -3'
miRNA:   3'- gUGGACCUUCUGC--UGGCg--GGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 182107 0.71 0.73544
Target:  5'- cCGCCUGG-AGACGgugggcugcgucaagGCCGUCUCGcUAGGc -3'
miRNA:   3'- -GUGGACCuUCUGC---------------UGGCGGGGC-AUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.