miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 203318 0.66 0.986325
Target:  5'- uGUCGC-UGAu-CUGGUACAgCguGGCg -3'
miRNA:   3'- -CAGUGcGCUuuGACCAUGUgGguCCG- -5'
14597 5' -53.3 NC_003521.1 + 99504 0.67 0.984637
Target:  5'- -aCuCGUGccGCUGGaggGCGCCCAGGa -3'
miRNA:   3'- caGuGCGCuuUGACCa--UGUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 141019 0.67 0.984637
Target:  5'- -gCACGUGGAggccguACUGcgccagguGUACAcCCCGGGCc -3'
miRNA:   3'- caGUGCGCUU------UGAC--------CAUGU-GGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 224679 0.67 0.984637
Target:  5'- uUCA-GCGuc-UUGGcgugGCGCCCGGGCg -3'
miRNA:   3'- cAGUgCGCuuuGACCa---UGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 170096 0.67 0.984637
Target:  5'- -gCugGaCGAAguGCcGGUACAUCCGGcGCa -3'
miRNA:   3'- caGugC-GCUU--UGaCCAUGUGGGUC-CG- -5'
14597 5' -53.3 NC_003521.1 + 124303 0.67 0.984637
Target:  5'- --aGCGCG--GCgaGGUGacgcaACCCAGGCa -3'
miRNA:   3'- cagUGCGCuuUGa-CCAUg----UGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 155405 0.67 0.984637
Target:  5'- --gGCGgGggGCUGG-GCACCgGaGGCc -3'
miRNA:   3'- cagUGCgCuuUGACCaUGUGGgU-CCG- -5'
14597 5' -53.3 NC_003521.1 + 236850 0.67 0.982795
Target:  5'- -cCGCGCcuGAC-GGUGC-CCCGGGUc -3'
miRNA:   3'- caGUGCGcuUUGaCCAUGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 169255 0.67 0.982795
Target:  5'- --uGCGCG-AACU-GUACGCCaaaaAGGCg -3'
miRNA:   3'- cagUGCGCuUUGAcCAUGUGGg---UCCG- -5'
14597 5' -53.3 NC_003521.1 + 133974 0.67 0.980791
Target:  5'- cGUCcauGCGCGGAcGCUGGccGCGgCCaAGGCu -3'
miRNA:   3'- -CAG---UGCGCUU-UGACCa-UGUgGG-UCCG- -5'
14597 5' -53.3 NC_003521.1 + 222743 0.67 0.980791
Target:  5'- cUCGCGCGccguCUGGgcUACGgCCAcGGCg -3'
miRNA:   3'- cAGUGCGCuuu-GACC--AUGUgGGU-CCG- -5'
14597 5' -53.3 NC_003521.1 + 116007 0.67 0.980791
Target:  5'- --gACGCuaggcaagugGGAGCUGGUGCugCCcuGGGUc -3'
miRNA:   3'- cagUGCG----------CUUUGACCAUGugGG--UCCG- -5'
14597 5' -53.3 NC_003521.1 + 95193 0.67 0.980791
Target:  5'- --gGCGCGGAACUcc-ACGCCC-GGCa -3'
miRNA:   3'- cagUGCGCUUUGAccaUGUGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 178664 0.67 0.980791
Target:  5'- -cUugGCGAAacGCUGGaACA-CCGGGUg -3'
miRNA:   3'- caGugCGCUU--UGACCaUGUgGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 29880 0.67 0.978617
Target:  5'- ---cCGUGgcGCUGuUGCACCUGGGCg -3'
miRNA:   3'- caguGCGCuuUGACcAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 85197 0.67 0.978617
Target:  5'- gGUCGCGUacGAcACUGcGU-CACCCGGcGCc -3'
miRNA:   3'- -CAGUGCG--CUuUGAC-CAuGUGGGUC-CG- -5'
14597 5' -53.3 NC_003521.1 + 47404 0.67 0.978617
Target:  5'- -gCGCgaGCGGAGCUGGauguagcauCGCUCGGGCc -3'
miRNA:   3'- caGUG--CGCUUUGACCau-------GUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 18767 0.67 0.978617
Target:  5'- gGUCGCugcuGCGAcGGCUGGUGC-CCCccGCc -3'
miRNA:   3'- -CAGUG----CGCU-UUGACCAUGuGGGucCG- -5'
14597 5' -53.3 NC_003521.1 + 112451 0.67 0.978617
Target:  5'- -cCAgGCGGccCUGGUgggcGCGCCC-GGCg -3'
miRNA:   3'- caGUgCGCUuuGACCA----UGUGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 124435 0.67 0.978617
Target:  5'- cGUC-CgGCGAGACgUGGUugGgCCGcGGCg -3'
miRNA:   3'- -CAGuG-CGCUUUG-ACCAugUgGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.