miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 44228 0.67 0.687661
Target:  5'- gGCUGcucaAGCucugccGCCGuGCGCGGGaGUCCggcgucacgCCg -3'
miRNA:   3'- gCGAC----UCG------UGGC-CGCGCCC-CAGGa--------GG- -5'
14599 5' -63 NC_003521.1 + 11568 0.67 0.687661
Target:  5'- cCGUcGuGCGCCGGacucuGCGGGGUCUg-- -3'
miRNA:   3'- -GCGaCuCGUGGCCg----CGCCCCAGGagg -5'
14599 5' -63 NC_003521.1 + 213024 0.67 0.679274
Target:  5'- gCGCcGGGCgaGCCGGCcgaGCGGGccggaguagguuucuUCCUCCg -3'
miRNA:   3'- -GCGaCUCG--UGGCCG---CGCCCc--------------AGGAGG- -5'
14599 5' -63 NC_003521.1 + 166226 0.67 0.678341
Target:  5'- gGCgagGcGCGCCGGcCGCGGGacgCCgcgCCg -3'
miRNA:   3'- gCGa--CuCGUGGCC-GCGCCCca-GGa--GG- -5'
14599 5' -63 NC_003521.1 + 76536 0.67 0.678341
Target:  5'- gGCUGcuGCugCGGUggcuguccaggaGCGGcGGUCCgcgCCu -3'
miRNA:   3'- gCGACu-CGugGCCG------------CGCC-CCAGGa--GG- -5'
14599 5' -63 NC_003521.1 + 123718 0.67 0.678341
Target:  5'- gGCUGAGCGgCGGagGCGGccUCgUCCg -3'
miRNA:   3'- gCGACUCGUgGCCg-CGCCccAGgAGG- -5'
14599 5' -63 NC_003521.1 + 123169 0.67 0.678341
Target:  5'- uGCUGAggugGCGgCGGCgGCGGGGgaCCguaggCCg -3'
miRNA:   3'- gCGACU----CGUgGCCG-CGCCCCa-GGa----GG- -5'
14599 5' -63 NC_003521.1 + 110363 0.67 0.678341
Target:  5'- aGCagGAGCGCUGGCGCGucGUCgaUCg -3'
miRNA:   3'- gCGa-CUCGUGGCCGCGCccCAGgaGG- -5'
14599 5' -63 NC_003521.1 + 123905 0.67 0.678341
Target:  5'- uGCUGucGGCGCgCGGCGCu--GUUCUCCa -3'
miRNA:   3'- gCGAC--UCGUG-GCCGCGcccCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 157042 0.67 0.678341
Target:  5'- gCGCggucggagGAGCG-CGGCGgGGGGcgCCgCCa -3'
miRNA:   3'- -GCGa-------CUCGUgGCCGCgCCCCa-GGaGG- -5'
14599 5' -63 NC_003521.1 + 152894 0.67 0.668989
Target:  5'- uGaaGAGCAugcCCGGCGCGGcGG-CCagCCa -3'
miRNA:   3'- gCgaCUCGU---GGCCGCGCC-CCaGGa-GG- -5'
14599 5' -63 NC_003521.1 + 132387 0.67 0.668989
Target:  5'- aCGgUGAuGCAgacagaCGGgGCGGGGUCC-CUg -3'
miRNA:   3'- -GCgACU-CGUg-----GCCgCGCCCCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 150472 0.67 0.668989
Target:  5'- gGCggcGAGCGCCuG-GUGGGGcCCUUCa -3'
miRNA:   3'- gCGa--CUCGUGGcCgCGCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 165794 0.67 0.659611
Target:  5'- cCGCUGGcGCuGCCGuCGCaguaGGGGUCCUggcCCa -3'
miRNA:   3'- -GCGACU-CG-UGGCcGCG----CCCCAGGA---GG- -5'
14599 5' -63 NC_003521.1 + 135780 0.67 0.659611
Target:  5'- gGCUGcucGCGCaCGG-GCGGGccGUCCUCg -3'
miRNA:   3'- gCGACu--CGUG-GCCgCGCCC--CAGGAGg -5'
14599 5' -63 NC_003521.1 + 196234 0.67 0.650215
Target:  5'- gGCUGAcuugGCGCCuGGCGCGGuuUCUgugguUCCg -3'
miRNA:   3'- gCGACU----CGUGG-CCGCGCCccAGG-----AGG- -5'
14599 5' -63 NC_003521.1 + 152355 0.67 0.650215
Target:  5'- aCGCUGcucuGGgGCCGGC-CGGGGcggcgcgcCCUCUa -3'
miRNA:   3'- -GCGAC----UCgUGGCCGcGCCCCa-------GGAGG- -5'
14599 5' -63 NC_003521.1 + 240069 0.68 0.640807
Target:  5'- uGCUuGGCcuCCGGCGUGGGG-CUUgCa -3'
miRNA:   3'- gCGAcUCGu-GGCCGCGCCCCaGGAgG- -5'
14599 5' -63 NC_003521.1 + 13484 0.68 0.640807
Target:  5'- gGuCUGGGCGaCGGggaaCGUGGGGUCUUUCg -3'
miRNA:   3'- gC-GACUCGUgGCC----GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 39842 0.68 0.640807
Target:  5'- uGCUuGGCcuCCGGCGUGGGG-CUUgCa -3'
miRNA:   3'- gCGAcUCGu-GGCCGCGCCCCaGGAgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.