miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 74577 0.72 0.378199
Target:  5'- gGCgacgGAGCGgCGGCGCGGcGUCCcgcggCCg -3'
miRNA:   3'- gCGa---CUCGUgGCCGCGCCcCAGGa----GG- -5'
14599 5' -63 NC_003521.1 + 75986 0.68 0.603177
Target:  5'- aGuCUG-GCGCCGGcCGCcGGuUCCUCCu -3'
miRNA:   3'- gC-GACuCGUGGCC-GCGcCCcAGGAGG- -5'
14599 5' -63 NC_003521.1 + 76536 0.67 0.678341
Target:  5'- gGCUGcuGCugCGGUggcuguccaggaGCGGcGGUCCgcgCCu -3'
miRNA:   3'- gCGACu-CGugGCCG------------CGCC-CCAGGa--GG- -5'
14599 5' -63 NC_003521.1 + 77959 0.67 0.687661
Target:  5'- uGCUGGGUcuuggaGCCGGcCGCGGGcUCg-CCg -3'
miRNA:   3'- gCGACUCG------UGGCC-GCGCCCcAGgaGG- -5'
14599 5' -63 NC_003521.1 + 87263 0.66 0.742517
Target:  5'- gGCUGuGCGCCGuGCGCGuGG-CCa-- -3'
miRNA:   3'- gCGACuCGUGGC-CGCGCcCCaGGagg -5'
14599 5' -63 NC_003521.1 + 92034 0.66 0.760225
Target:  5'- gCGgUGGGU-CCGGgGgucccCGGGGUgCCUCCc -3'
miRNA:   3'- -GCgACUCGuGGCCgC-----GCCCCA-GGAGG- -5'
14599 5' -63 NC_003521.1 + 99193 0.68 0.612572
Target:  5'- gGCUGAagGUGgCGGCggaggauacgGCGGGGUCCgcggUCCu -3'
miRNA:   3'- gCGACU--CGUgGCCG----------CGCCCCAGG----AGG- -5'
14599 5' -63 NC_003521.1 + 106355 0.66 0.733536
Target:  5'- -uUUGGGCugCGGUaGCGGGGaaccgccaUCUCCg -3'
miRNA:   3'- gcGACUCGugGCCG-CGCCCCa-------GGAGG- -5'
14599 5' -63 NC_003521.1 + 106465 0.7 0.493314
Target:  5'- uGUUGAGCgacuucucgGCCagcaucggcGGCGgGGGGUCC-CCg -3'
miRNA:   3'- gCGACUCG---------UGG---------CCGCgCCCCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 110363 0.67 0.678341
Target:  5'- aGCagGAGCGCUGGCGCGucGUCgaUCg -3'
miRNA:   3'- gCGa-CUCGUGGCCGCGCccCAGgaGG- -5'
14599 5' -63 NC_003521.1 + 110645 0.67 0.696942
Target:  5'- uCGCcGGGCGCCGGCaCGGucacggcccGGUCggCCa -3'
miRNA:   3'- -GCGaCUCGUGGCCGcGCC---------CCAGgaGG- -5'
14599 5' -63 NC_003521.1 + 111101 0.69 0.544626
Target:  5'- gCGCUcGGCgucgacgggccgcgGCCGGCagaaGCGGGcGUCCUCg -3'
miRNA:   3'- -GCGAcUCG--------------UGGCCG----CGCCC-CAGGAGg -5'
14599 5' -63 NC_003521.1 + 112969 0.68 0.637983
Target:  5'- uGgUGGGCaaccugcccgacggGCUGGCGcCGGGGcCCUuCCa -3'
miRNA:   3'- gCgACUCG--------------UGGCCGC-GCCCCaGGA-GG- -5'
14599 5' -63 NC_003521.1 + 113834 0.67 0.687661
Target:  5'- aCGUcGGGCAgCGGCaGCGGGG-CggCCg -3'
miRNA:   3'- -GCGaCUCGUgGCCG-CGCCCCaGgaGG- -5'
14599 5' -63 NC_003521.1 + 119619 0.66 0.732634
Target:  5'- uGCUGcAGguggacguuuaccCACUGGcCGCGGGcGUCCgucUCCg -3'
miRNA:   3'- gCGAC-UC-------------GUGGCC-GCGCCC-CAGG---AGG- -5'
14599 5' -63 NC_003521.1 + 120374 0.66 0.760225
Target:  5'- uCGCUGuauuauuuGCGgCGGaCGCGagcaucGGuGUCCUCCu -3'
miRNA:   3'- -GCGACu-------CGUgGCC-GCGC------CC-CAGGAGG- -5'
14599 5' -63 NC_003521.1 + 123064 0.7 0.47583
Target:  5'- uGCUGGGaCGgCGGCgGCGGaGGagCUCCg -3'
miRNA:   3'- gCGACUC-GUgGCCG-CGCC-CCagGAGG- -5'
14599 5' -63 NC_003521.1 + 123169 0.67 0.678341
Target:  5'- uGCUGAggugGCGgCGGCgGCGGGGgaCCguaggCCg -3'
miRNA:   3'- gCGACU----CGUgGCCG-CGCCCCa-GGa----GG- -5'
14599 5' -63 NC_003521.1 + 123718 0.67 0.678341
Target:  5'- gGCUGAGCGgCGGagGCGGccUCgUCCg -3'
miRNA:   3'- gCGACUCGUgGCCg-CGCCccAGgAGG- -5'
14599 5' -63 NC_003521.1 + 123905 0.67 0.678341
Target:  5'- uGCUGucGGCGCgCGGCGCu--GUUCUCCa -3'
miRNA:   3'- gCGAC--UCGUG-GCCGCGcccCAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.