miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 3968 0.66 0.751415
Target:  5'- aGCggaggacccgGGGCACCGucaGCGCGGaGGUCUggCg -3'
miRNA:   3'- gCGa---------CUCGUGGC---CGCGCC-CCAGGagG- -5'
14599 5' -63 NC_003521.1 + 5829 0.66 0.742517
Target:  5'- uGCcGGGUcCCGGCGacCGGGGcCCUUUu -3'
miRNA:   3'- gCGaCUCGuGGCCGC--GCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 7814 0.66 0.751415
Target:  5'- aGCUGgacggcgucaaGGCcauCCGGCGCcagaagacgagGGGGUggcggacggCCUCCa -3'
miRNA:   3'- gCGAC-----------UCGu--GGCCGCG-----------CCCCA---------GGAGG- -5'
14599 5' -63 NC_003521.1 + 11568 0.67 0.687661
Target:  5'- cCGUcGuGCGCCGGacucuGCGGGGUCUg-- -3'
miRNA:   3'- -GCGaCuCGUGGCCg----CGCCCCAGGagg -5'
14599 5' -63 NC_003521.1 + 12194 0.66 0.751415
Target:  5'- uGgUGGuUugCGcGcCGCGGGGUUCUCCu -3'
miRNA:   3'- gCgACUcGugGC-C-GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 13484 0.68 0.640807
Target:  5'- gGuCUGGGCGaCGGggaaCGUGGGGUCUUUCg -3'
miRNA:   3'- gC-GACUCGUgGCC----GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 13841 0.66 0.751415
Target:  5'- uGuCUGuauuuGGC-UCGGCGCGGGGgUCUCUg -3'
miRNA:   3'- gC-GAC-----UCGuGGCCGCGCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 13894 0.69 0.556585
Target:  5'- uCGCcgggGGGC-CCGGCGCGGaGGgggCCgcggaggCCg -3'
miRNA:   3'- -GCGa---CUCGuGGCCGCGCC-CCa--GGa------GG- -5'
14599 5' -63 NC_003521.1 + 15248 0.67 0.696942
Target:  5'- cCGCcGAGCGCCaGGaCGacacGGGUCC-CCg -3'
miRNA:   3'- -GCGaCUCGUGG-CC-GCgc--CCCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 16285 0.66 0.759348
Target:  5'- uGCUGGGCgccgugggugccuACCGGCcCGGcGGcUUCUUCg -3'
miRNA:   3'- gCGACUCG-------------UGGCCGcGCC-CC-AGGAGG- -5'
14599 5' -63 NC_003521.1 + 39572 0.73 0.355977
Target:  5'- uCGCaucgGAGUccuGCCGGCGuCGGcGGUCCUgCCc -3'
miRNA:   3'- -GCGa---CUCG---UGGCCGC-GCC-CCAGGA-GG- -5'
14599 5' -63 NC_003521.1 + 39807 0.73 0.363281
Target:  5'- gGCgGGGCGCCGG-GCGG--UCCUCCg -3'
miRNA:   3'- gCGaCUCGUGGCCgCGCCccAGGAGG- -5'
14599 5' -63 NC_003521.1 + 39842 0.68 0.640807
Target:  5'- uGCUuGGCcuCCGGCGUGGGG-CUUgCa -3'
miRNA:   3'- gCGAcUCGu-GGCCGCGCCCCaGGAgG- -5'
14599 5' -63 NC_003521.1 + 44228 0.67 0.687661
Target:  5'- gGCUGcucaAGCucugccGCCGuGCGCGGGaGUCCggcgucacgCCg -3'
miRNA:   3'- gCGAC----UCG------UGGC-CGCGCCC-CAGGa--------GG- -5'
14599 5' -63 NC_003521.1 + 45629 0.66 0.742517
Target:  5'- aCGCaGAcggccaccGcCGCCGGCuccGCGGGGUCCg-- -3'
miRNA:   3'- -GCGaCU--------C-GUGGCCG---CGCCCCAGGagg -5'
14599 5' -63 NC_003521.1 + 47526 0.68 0.621979
Target:  5'- aGCUGAGCAgCGuGuCcCGGaGGUCgUCCa -3'
miRNA:   3'- gCGACUCGUgGC-C-GcGCC-CCAGgAGG- -5'
14599 5' -63 NC_003521.1 + 63086 0.66 0.706177
Target:  5'- aGCU--GCGCCGGCGCGcugcccGcCCUCCa -3'
miRNA:   3'- gCGAcuCGUGGCCGCGCcc----CaGGAGG- -5'
14599 5' -63 NC_003521.1 + 71475 0.66 0.715359
Target:  5'- uGCUGGcGCGCCGaCGCGacuGGUCCUa- -3'
miRNA:   3'- gCGACU-CGUGGCcGCGCc--CCAGGAgg -5'
14599 5' -63 NC_003521.1 + 72299 0.66 0.724481
Target:  5'- gCGCUGgccgccAGCcuGCUGGCGuCGccGUCCUCCg -3'
miRNA:   3'- -GCGAC------UCG--UGGCCGC-GCccCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 74171 0.67 0.694162
Target:  5'- cCGCUGgccgacugcgccgcGGCGcCCGGCGCGcGGcCCgacgCCg -3'
miRNA:   3'- -GCGAC--------------UCGU-GGCCGCGCcCCaGGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.