miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 99193 0.68 0.612572
Target:  5'- gGCUGAagGUGgCGGCggaggauacgGCGGGGUCCgcggUCCu -3'
miRNA:   3'- gCGACU--CGUgGCCG----------CGCCCCAGG----AGG- -5'
14599 5' -63 NC_003521.1 + 128922 0.7 0.501277
Target:  5'- gGUUGAGgGCCuGGCGCGccagcguGGcGUUCUCCa -3'
miRNA:   3'- gCGACUCgUGG-CCGCGC-------CC-CAGGAGG- -5'
14599 5' -63 NC_003521.1 + 228902 0.69 0.547379
Target:  5'- aGCcGGGC-CCGGC-UGGGGgacucgaucUCCUCCa -3'
miRNA:   3'- gCGaCUCGuGGCCGcGCCCC---------AGGAGG- -5'
14599 5' -63 NC_003521.1 + 133748 0.69 0.551056
Target:  5'- uGCUGgccGGCAggcCCGGCGauucCGGGGacgcggcggaguuuuUCCUCCa -3'
miRNA:   3'- gCGAC---UCGU---GGCCGC----GCCCC---------------AGGAGG- -5'
14599 5' -63 NC_003521.1 + 225670 0.69 0.565835
Target:  5'- gCGgUGcAGCACCaaGGCGuUGGGGUCCaggcgcUCCc -3'
miRNA:   3'- -GCgAC-UCGUGG--CCGC-GCCCCAGG------AGG- -5'
14599 5' -63 NC_003521.1 + 134070 0.69 0.565835
Target:  5'- cCGcCUGGGCGCCcuGGaCGCGGaGGugUCCaUCCa -3'
miRNA:   3'- -GC-GACUCGUGG--CC-GCGCC-CC--AGG-AGG- -5'
14599 5' -63 NC_003521.1 + 220502 0.68 0.593801
Target:  5'- gGgaGAGCAgCaGCGUGGuGG-CCUCCu -3'
miRNA:   3'- gCgaCUCGUgGcCGCGCC-CCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 150571 0.68 0.603177
Target:  5'- gGCggcGGCGgCGGCGCGGc-UCCUCCu -3'
miRNA:   3'- gCGac-UCGUgGCCGCGCCccAGGAGG- -5'
14599 5' -63 NC_003521.1 + 166267 0.68 0.603177
Target:  5'- uGCUcacGGGCACgcgcaCGGCGCGGcuGGUCCgcguggCCu -3'
miRNA:   3'- gCGA---CUCGUG-----GCCGCGCC--CCAGGa-----GG- -5'
14599 5' -63 NC_003521.1 + 106465 0.7 0.493314
Target:  5'- uGUUGAGCgacuucucgGCCagcaucggcGGCGgGGGGUCC-CCg -3'
miRNA:   3'- gCGACUCG---------UGG---------CCGCgCCCCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 133347 0.7 0.47583
Target:  5'- -uCUGGGCGCCGGaCGUGGagaucagcacGGUCCgCCg -3'
miRNA:   3'- gcGACUCGUGGCC-GCGCC----------CCAGGaGG- -5'
14599 5' -63 NC_003521.1 + 187483 0.71 0.425349
Target:  5'- cCGCc--GCGCCGGCGUGGuGGUCacgacgaUCCg -3'
miRNA:   3'- -GCGacuCGUGGCCGCGCC-CCAGg------AGG- -5'
14599 5' -63 NC_003521.1 + 127219 0.76 0.242396
Target:  5'- uCGUcGu-CGCUGGCGCGGuGGUCCUCCa -3'
miRNA:   3'- -GCGaCucGUGGCCGCGCC-CCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 214566 0.75 0.258994
Target:  5'- uGCagUGAGCAgCaggGGCGaGGGGUCCUCCu -3'
miRNA:   3'- gCG--ACUCGUgG---CCGCgCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 39572 0.73 0.355977
Target:  5'- uCGCaucgGAGUccuGCCGGCGuCGGcGGUCCUgCCc -3'
miRNA:   3'- -GCGa---CUCG---UGGCCGC-GCC-CCAGGA-GG- -5'
14599 5' -63 NC_003521.1 + 240034 0.73 0.363281
Target:  5'- gGCgGGGCGCCGG-GCGG--UCCUCCg -3'
miRNA:   3'- gCGaCUCGUGGCCgCGCCccAGGAGG- -5'
14599 5' -63 NC_003521.1 + 128736 0.73 0.366232
Target:  5'- cCGCUGAcuugGCGCCcgagcccgugguguaGGUgGUGGGGUUCUCCa -3'
miRNA:   3'- -GCGACU----CGUGG---------------CCG-CGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 74577 0.72 0.378199
Target:  5'- gGCgacgGAGCGgCGGCGCGGcGUCCcgcggCCg -3'
miRNA:   3'- gCGa---CUCGUgGCCGCGCCcCAGGa----GG- -5'
14599 5' -63 NC_003521.1 + 206139 0.72 0.38581
Target:  5'- uGCUGAGaACgGGC-CGGGGaaaggCCUCCg -3'
miRNA:   3'- gCGACUCgUGgCCGcGCCCCa----GGAGG- -5'
14599 5' -63 NC_003521.1 + 150440 0.72 0.393522
Target:  5'- aGgaGAGCGC--GCcCGGGGUCCUCCu -3'
miRNA:   3'- gCgaCUCGUGgcCGcGCCCCAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.