miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14599 5' -63 NC_003521.1 + 236837 0.66 0.724481
Target:  5'- uCGCgccaGAccuccGCGCCugacGGUGCcccGGGUCCUCCg -3'
miRNA:   3'- -GCGa---CU-----CGUGG----CCGCGc--CCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 5829 0.66 0.742517
Target:  5'- uGCcGGGUcCCGGCGacCGGGGcCCUUUu -3'
miRNA:   3'- gCGaCUCGuGGCCGC--GCCCCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 202736 0.66 0.706177
Target:  5'- aCGC--GGCAggGGCGCGGGGaCC-CCg -3'
miRNA:   3'- -GCGacUCGUggCCGCGCCCCaGGaGG- -5'
14599 5' -63 NC_003521.1 + 131044 0.66 0.706177
Target:  5'- -cCUGGGCGgCGGCgGCGGG--CCUCUg -3'
miRNA:   3'- gcGACUCGUgGCCG-CGCCCcaGGAGG- -5'
14599 5' -63 NC_003521.1 + 63086 0.66 0.706177
Target:  5'- aGCU--GCGCCGGCGCGcugcccGcCCUCCa -3'
miRNA:   3'- gCGAcuCGUGGCCGCGCcc----CaGGAGG- -5'
14599 5' -63 NC_003521.1 + 195997 0.66 0.706177
Target:  5'- aGCcccagGAGCugUGGCGUGucGcCCUCCg -3'
miRNA:   3'- gCGa----CUCGugGCCGCGCccCaGGAGG- -5'
14599 5' -63 NC_003521.1 + 119619 0.66 0.732634
Target:  5'- uGCUGcAGguggacguuuaccCACUGGcCGCGGGcGUCCgucUCCg -3'
miRNA:   3'- gCGAC-UC-------------GUGGCC-GCGCCC-CAGG---AGG- -5'
14599 5' -63 NC_003521.1 + 142929 0.66 0.733536
Target:  5'- gCGUUGcAGCAgCGGCggucagggucaGCGGGGgccccuggUCUCCc -3'
miRNA:   3'- -GCGAC-UCGUgGCCG-----------CGCCCCa-------GGAGG- -5'
14599 5' -63 NC_003521.1 + 106355 0.66 0.733536
Target:  5'- -uUUGGGCugCGGUaGCGGGGaaccgccaUCUCCg -3'
miRNA:   3'- gcGACUCGugGCCG-CGCCCCa-------GGAGG- -5'
14599 5' -63 NC_003521.1 + 124010 0.66 0.760225
Target:  5'- cCGCUGcAGCACCca-GuCGGGGUCgCggCCg -3'
miRNA:   3'- -GCGAC-UCGUGGccgC-GCCCCAG-Ga-GG- -5'
14599 5' -63 NC_003521.1 + 197270 0.66 0.706177
Target:  5'- aCGC--GGCGCCGGCgGCGGGGagCg-- -3'
miRNA:   3'- -GCGacUCGUGGCCG-CGCCCCagGagg -5'
14599 5' -63 NC_003521.1 + 227607 0.66 0.742517
Target:  5'- gGCuUGGGCGCCGGU-CGGc--CCUCCa -3'
miRNA:   3'- gCG-ACUCGUGGCCGcGCCccaGGAGG- -5'
14599 5' -63 NC_003521.1 + 129823 0.66 0.742517
Target:  5'- uGCUGGGcCGCCuGCuGCuGGGGcCCguggCCg -3'
miRNA:   3'- gCGACUC-GUGGcCG-CG-CCCCaGGa---GG- -5'
14599 5' -63 NC_003521.1 + 191887 0.66 0.733536
Target:  5'- -aCUGGGCGgCGGCGCcacGUCCUUCa -3'
miRNA:   3'- gcGACUCGUgGCCGCGcccCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 220562 0.66 0.74341
Target:  5'- cCGCUGAGCguACCGGCGaCGGcuuaugaaaacagCCgUCCg -3'
miRNA:   3'- -GCGACUCG--UGGCCGC-GCCcca----------GG-AGG- -5'
14599 5' -63 NC_003521.1 + 164836 0.66 0.715359
Target:  5'- uGCUGAcgGCGcCCGGCGa-GGGcCgCUCCu -3'
miRNA:   3'- gCGACU--CGU-GGCCGCgcCCCaG-GAGG- -5'
14599 5' -63 NC_003521.1 + 45629 0.66 0.742517
Target:  5'- aCGCaGAcggccaccGcCGCCGGCuccGCGGGGUCCg-- -3'
miRNA:   3'- -GCGaCU--------C-GUGGCCG---CGCCCCAGGagg -5'
14599 5' -63 NC_003521.1 + 12194 0.66 0.751415
Target:  5'- uGgUGGuUugCGcGcCGCGGGGUUCUCCu -3'
miRNA:   3'- gCgACUcGugGC-C-GCGCCCCAGGAGG- -5'
14599 5' -63 NC_003521.1 + 92034 0.66 0.760225
Target:  5'- gCGgUGGGU-CCGGgGgucccCGGGGUgCCUCCc -3'
miRNA:   3'- -GCgACUCGuGGCCgC-----GCCCCA-GGAGG- -5'
14599 5' -63 NC_003521.1 + 221351 0.66 0.706177
Target:  5'- cCGCUuuGCGgCGGUaGaggaGGGGUCCUCg -3'
miRNA:   3'- -GCGAcuCGUgGCCG-Cg---CCCCAGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.