miRNA display CGI


Results 41 - 60 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 3' -58 NC_003521.1 + 76325 0.66 0.915021
Target:  5'- gGCGgCGACaGCUGcGGAGGCGAcgguGACg -3'
miRNA:   3'- gCGCgGCUG-CGGCcCUUUCGCUu---CUG- -5'
14600 3' -58 NC_003521.1 + 108201 0.66 0.915021
Target:  5'- gGCGCCGcCGCCGagucuGGAAGccguuGCGGAcgccGACg -3'
miRNA:   3'- gCGCGGCuGCGGC-----CCUUU-----CGCUU----CUG- -5'
14600 3' -58 NC_003521.1 + 168138 0.66 0.915021
Target:  5'- aGCGCCGugGgUGGacGGGGCGGaauagGGGCg -3'
miRNA:   3'- gCGCGGCugCgGCCc-UUUCGCU-----UCUG- -5'
14600 3' -58 NC_003521.1 + 223782 0.66 0.915021
Target:  5'- gGCGCCGuuacCGCCGuGGGccGCc-AGACg -3'
miRNA:   3'- gCGCGGCu---GCGGC-CCUuuCGcuUCUG- -5'
14600 3' -58 NC_003521.1 + 102793 0.66 0.915021
Target:  5'- aCGCGCCGGCgGCCGcc--AGCucGGGCg -3'
miRNA:   3'- -GCGCGGCUG-CGGCccuuUCGcuUCUG- -5'
14600 3' -58 NC_003521.1 + 145865 0.66 0.915021
Target:  5'- gGC-CCGGCGgCGGGc-GGCGccGACg -3'
miRNA:   3'- gCGcGGCUGCgGCCCuuUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 28079 0.66 0.915021
Target:  5'- gGgGaggaCGACGgCGGGGAAGcCGAgcAGGCg -3'
miRNA:   3'- gCgCg---GCUGCgGCCCUUUC-GCU--UCUG- -5'
14600 3' -58 NC_003521.1 + 201537 0.66 0.915021
Target:  5'- cCGCuaCGGCGCCGGcGAcguGGCGc-GGCu -3'
miRNA:   3'- -GCGcgGCUGCGGCC-CUu--UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 187632 0.66 0.913907
Target:  5'- cCGgGCCGcGCGCCGcuGGccaucuucaucGGCGAGGGCg -3'
miRNA:   3'- -GCgCGGC-UGCGGC--CCuu---------UCGCUUCUG- -5'
14600 3' -58 NC_003521.1 + 39219 0.66 0.909362
Target:  5'- aGCGCgGGC-UCGGGGAcAGCGguGGCc -3'
miRNA:   3'- gCGCGgCUGcGGCCCUU-UCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 3746 0.66 0.909362
Target:  5'- gGCGacauCG-CGCCGGGAugGAGCGAGcccuGAUg -3'
miRNA:   3'- gCGCg---GCuGCGGCCCU--UUCGCUU----CUG- -5'
14600 3' -58 NC_003521.1 + 197860 0.66 0.909362
Target:  5'- gGCGCCGGCgggucgcgcucGCUGGGcugcAGGCGGcagcGGAUg -3'
miRNA:   3'- gCGCGGCUG-----------CGGCCCu---UUCGCU----UCUG- -5'
14600 3' -58 NC_003521.1 + 201515 0.66 0.909362
Target:  5'- uGCGUcgCGAUGCUgccuGGGAGAGUGu-GACg -3'
miRNA:   3'- gCGCG--GCUGCGG----CCCUUUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 136965 0.66 0.909362
Target:  5'- gGCGCUGAuCGCCagccuGGAcgAGGCcGAGACg -3'
miRNA:   3'- gCGCGGCU-GCGGc----CCU--UUCGcUUCUG- -5'
14600 3' -58 NC_003521.1 + 113053 0.66 0.909362
Target:  5'- aCGCGCCGugcuccagcACcuuCCGGGcuacGAGGCGcAGACg -3'
miRNA:   3'- -GCGCGGC---------UGc--GGCCC----UUUCGCuUCUG- -5'
14600 3' -58 NC_003521.1 + 123683 0.66 0.909362
Target:  5'- gCGCGCugCGGCGUggCGGuGGAAGaGGAGGCg -3'
miRNA:   3'- -GCGCG--GCUGCG--GCC-CUUUCgCUUCUG- -5'
14600 3' -58 NC_003521.1 + 77456 0.66 0.909362
Target:  5'- uCGgGCCGGCGCuccuucuggCGGuucauGAGGCGggGAUc -3'
miRNA:   3'- -GCgCGGCUGCG---------GCCc----UUUCGCuuCUG- -5'
14600 3' -58 NC_003521.1 + 47803 0.66 0.909362
Target:  5'- uCGCGUCGACGCCa-GAAAGagaccaugcaGAAGAg -3'
miRNA:   3'- -GCGCGGCUGCGGccCUUUCg---------CUUCUg -5'
14600 3' -58 NC_003521.1 + 225313 0.66 0.909362
Target:  5'- uGcCGCCGccaacccgaGCGCCGGaGAAGGaGGAGAa -3'
miRNA:   3'- gC-GCGGC---------UGCGGCC-CUUUCgCUUCUg -5'
14600 3' -58 NC_003521.1 + 239521 0.66 0.909362
Target:  5'- -uCGCCGGCGCCGuagcGGAAccauucgucGGCGucgcGGGCg -3'
miRNA:   3'- gcGCGGCUGCGGC----CCUU---------UCGCu---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.