miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14600 5' -55.7 NC_003521.1 + 106110 0.68 0.933046
Target:  5'- uCGGgcacgGG-CGUGGCGGCc--GUGGGCAc -3'
miRNA:   3'- -GCCa----CCaGCGCCGCUGcaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 116471 0.68 0.928066
Target:  5'- uGGUGGgacaCGUGGCGGCGaUGaAGaGCGu -3'
miRNA:   3'- gCCACCa---GCGCCGCUGCaAUaUC-CGU- -5'
14600 5' -55.7 NC_003521.1 + 98474 0.68 0.922863
Target:  5'- gCGGcGGcCGCGGCGGcCGUggc-GGCGg -3'
miRNA:   3'- -GCCaCCaGCGCCGCU-GCAauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 107817 0.68 0.922863
Target:  5'- gGGUGuuccacCGCGGC-ACGUUGUAGaGCAu -3'
miRNA:   3'- gCCACca----GCGCCGcUGCAAUAUC-CGU- -5'
14600 5' -55.7 NC_003521.1 + 177764 0.68 0.922863
Target:  5'- aCGG-GGUCGCGGUcgucgccagggccGACGgggccuguccgcugGUGGGCGu -3'
miRNA:   3'- -GCCaCCAGCGCCG-------------CUGCaa------------UAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 90935 0.68 0.92233
Target:  5'- gGGUGGgCGCgGGCGAUggaagaggaagaaGUggUGUGGGCGg -3'
miRNA:   3'- gCCACCaGCG-CCGCUG-------------CA--AUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 178771 0.68 0.917436
Target:  5'- aGGUcuucauGGUUGCGGCGuccGCGggAcGGGCGa -3'
miRNA:   3'- gCCA------CCAGCGCCGC---UGCaaUaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 115449 0.68 0.917436
Target:  5'- aCGGUGGUugUGCGGacgGugGUaGUGGuGCAg -3'
miRNA:   3'- -GCCACCA--GCGCCg--CugCAaUAUC-CGU- -5'
14600 5' -55.7 NC_003521.1 + 168537 0.68 0.917436
Target:  5'- uGGcGGccagCGCGGCGGCGgcgcuGGCGg -3'
miRNA:   3'- gCCaCCa---GCGCCGCUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 39389 0.68 0.917436
Target:  5'- aCGGUaaGG-CGgGGCGAUGUUGgagccgaguuUGGGCGc -3'
miRNA:   3'- -GCCA--CCaGCgCCGCUGCAAU----------AUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 98957 0.68 0.911787
Target:  5'- gGGUGGUgGCGGCuagcGACGgc---GGCGc -3'
miRNA:   3'- gCCACCAgCGCCG----CUGCaauauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 127882 0.68 0.911787
Target:  5'- uCGGgcgGGUCGCGGUaGGCGUaGUAGuuGCc -3'
miRNA:   3'- -GCCa--CCAGCGCCG-CUGCAaUAUC--CGu -5'
14600 5' -55.7 NC_003521.1 + 108295 0.68 0.911787
Target:  5'- gCGGUGGUgGCGGUGACGa-------- -3'
miRNA:   3'- -GCCACCAgCGCCGCUGCaauauccgu -5'
14600 5' -55.7 NC_003521.1 + 124077 0.68 0.905916
Target:  5'- uGGUGucGUCGuCGGgccCGACGgcGUGGGCGg -3'
miRNA:   3'- gCCAC--CAGC-GCC---GCUGCaaUAUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 98216 0.68 0.905916
Target:  5'- uCGGcGGgcaGCGGCGugGg---AGGCGg -3'
miRNA:   3'- -GCCaCCag-CGCCGCugCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 37383 0.69 0.899826
Target:  5'- gCGGUGuUCGaGGCGGCGg---GGGCGc -3'
miRNA:   3'- -GCCACcAGCgCCGCUGCaauaUCCGU- -5'
14600 5' -55.7 NC_003521.1 + 76347 0.69 0.89352
Target:  5'- aCGGUgacGGcUGCGGCGGCGgcAgcGGCGa -3'
miRNA:   3'- -GCCA---CCaGCGCCGCUGCaaUauCCGU- -5'
14600 5' -55.7 NC_003521.1 + 110686 0.69 0.892877
Target:  5'- uCGGUGGcggcaGCGGCGGCGccgccgacgacgcagGGGCAg -3'
miRNA:   3'- -GCCACCag---CGCCGCUGCaaua-----------UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 163347 0.69 0.886999
Target:  5'- gCGGUuguagcGGUagcaGCGGCGGCGgcagUGUcacGGGCAc -3'
miRNA:   3'- -GCCA------CCAg---CGCCGCUGCa---AUA---UCCGU- -5'
14600 5' -55.7 NC_003521.1 + 192357 0.69 0.880269
Target:  5'- uCGGUGcUCGCacgGGCGGCGUUGgGGGaCGc -3'
miRNA:   3'- -GCCACcAGCG---CCGCUGCAAUaUCC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.