miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 137924 0.66 0.633829
Target:  5'- -gGCUGGCGGGUCGcGgUUCCCuGCC-Cg -3'
miRNA:   3'- cgCGGUCGUCCAGC-CgGAGGG-CGGuG- -5'
14601 3' -63.9 NC_003521.1 + 151782 0.66 0.633829
Target:  5'- cGCGCCuGCAGGUacagcaugaaggUGGCCggcacgugUUCCaCCACg -3'
miRNA:   3'- -CGCGGuCGUCCA------------GCCGG--------AGGGcGGUG- -5'
14601 3' -63.9 NC_003521.1 + 191814 0.66 0.671639
Target:  5'- aCGUCuGCAuGGacUCGGCgUCCCGCagCACg -3'
miRNA:   3'- cGCGGuCGU-CC--AGCCGgAGGGCG--GUG- -5'
14601 3' -63.9 NC_003521.1 + 132777 0.66 0.671639
Target:  5'- -aGCUGGUccGUCGcGUCaUCCCGCCGCc -3'
miRNA:   3'- cgCGGUCGucCAGC-CGG-AGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 239447 0.66 0.652762
Target:  5'- aGCGCgGGCucGGGgacagCGGUggCCCGCgGCg -3'
miRNA:   3'- -CGCGgUCG--UCCa----GCCGgaGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 155695 0.66 0.690406
Target:  5'- cCGCCgaGGgAGGcuaCGuGCCgCCCGCCGCu -3'
miRNA:   3'- cGCGG--UCgUCCa--GC-CGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 129999 0.66 0.652762
Target:  5'- uGCGCCGGC-GG-CGGCgCgcaaCgGCCGCu -3'
miRNA:   3'- -CGCGGUCGuCCaGCCG-Gag--GgCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 119802 0.66 0.671639
Target:  5'- gGCGCCAGCGGGgcgacaCGGUggUgCGCaCGCc -3'
miRNA:   3'- -CGCGGUCGUCCa-----GCCGgaGgGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 137842 0.66 0.652762
Target:  5'- aCGCC-GCGGcUgGGCCgcCCCGCCAg -3'
miRNA:   3'- cGCGGuCGUCcAgCCGGa-GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 142390 0.66 0.690406
Target:  5'- aGC-CCAGgAGGccgCGGCC-CUgGCCGCc -3'
miRNA:   3'- -CGcGGUCgUCCa--GCCGGaGGgCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 5539 0.66 0.671639
Target:  5'- aCGgCAGCcGGcgCGGCCg-CCGCCAUc -3'
miRNA:   3'- cGCgGUCGuCCa-GCCGGagGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 96073 0.66 0.690406
Target:  5'- cCGCCAGCagccGGGUCaGCUcCUCGUCAUc -3'
miRNA:   3'- cGCGGUCG----UCCAGcCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 218627 0.66 0.690406
Target:  5'- aGCGCgCGGCGGuaagCGGCCacggCCgGCgGCg -3'
miRNA:   3'- -CGCG-GUCGUCca--GCCGGa---GGgCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 121055 0.66 0.690406
Target:  5'- uGCGCCGGUcccAGGUgugcUGGUaCUCCagcuuGCCGCa -3'
miRNA:   3'- -CGCGGUCG---UCCA----GCCG-GAGGg----CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 150767 0.66 0.652762
Target:  5'- cCGCgAGCGcGUCGGCgUCCCGgaGCu -3'
miRNA:   3'- cGCGgUCGUcCAGCCGgAGGGCggUG- -5'
14601 3' -63.9 NC_003521.1 + 223037 0.66 0.680101
Target:  5'- -gGCCAGCAcgccGaCGGCCUCCaggucauCGUCACa -3'
miRNA:   3'- cgCGGUCGUc---CaGCCGGAGG-------GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 106362 0.66 0.671639
Target:  5'- uGCGgUAGCGGGgaaCcGCCaUCuCCGCCGCc -3'
miRNA:   3'- -CGCgGUCGUCCa--GcCGG-AG-GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 170050 0.66 0.633829
Target:  5'- uCGCCAugAGGUUGGCgUUCCCgGUCGCg -3'
miRNA:   3'- cGCGGUcgUCCAGCCG-GAGGG-CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 92030 0.66 0.649925
Target:  5'- gGCGgCGGUGGGUCcggggguccccgggGuGCCUCCCGUaGCg -3'
miRNA:   3'- -CGCgGUCGUCCAG--------------C-CGGAGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 75551 0.66 0.671639
Target:  5'- gGCGCCGGC-GG-CGGCUa--CGCCAg -3'
miRNA:   3'- -CGCGGUCGuCCaGCCGGaggGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.