miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 77928 0.66 0.633829
Target:  5'- gGCGuCCuGCAGGcaguagCGGCCcaCCUGCgCGCg -3'
miRNA:   3'- -CGC-GGuCGUCCa-----GCCGGa-GGGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 56645 0.66 0.652762
Target:  5'- aGCGCaccaCGGGcCGGugcaCCUCCCGCuCGCg -3'
miRNA:   3'- -CGCGguc-GUCCaGCC----GGAGGGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 90028 0.66 0.652762
Target:  5'- aGCGCCcccuGGCGGcUCGcGCCcgCCCGUCGu -3'
miRNA:   3'- -CGCGG----UCGUCcAGC-CGGa-GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 31490 0.66 0.643299
Target:  5'- cGCGUC-GCGGGUUGGCacaggCCCaGCC-Cg -3'
miRNA:   3'- -CGCGGuCGUCCAGCCGga---GGG-CGGuG- -5'
14601 3' -63.9 NC_003521.1 + 239447 0.66 0.652762
Target:  5'- aGCGCgGGCucGGGgacagCGGUggCCCGCgGCg -3'
miRNA:   3'- -CGCGgUCG--UCCa----GCCGgaGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 140823 0.66 0.633829
Target:  5'- cGCGCUuc----UCGGCCUUCCGUCACg -3'
miRNA:   3'- -CGCGGucguccAGCCGGAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 43817 0.66 0.652762
Target:  5'- uCGCagCAGcCGGGUCaGCCgccgCCgGCCGCg -3'
miRNA:   3'- cGCG--GUC-GUCCAGcCGGa---GGgCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 149976 0.66 0.652762
Target:  5'- -gGUCAGCAGcagcacgggCGGCgCgcaCCCGCCGCa -3'
miRNA:   3'- cgCGGUCGUCca-------GCCG-Ga--GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 238543 0.66 0.643299
Target:  5'- -gGCCAGCGGGUagaggUGGCCgUCCUgggggcaguaGCCGa -3'
miRNA:   3'- cgCGGUCGUCCA-----GCCGG-AGGG----------CGGUg -5'
14601 3' -63.9 NC_003521.1 + 192464 0.66 0.641406
Target:  5'- gGCGCCGGUuuccaggacggcGGUCGGCUgaUCaCCGuguCCACg -3'
miRNA:   3'- -CGCGGUCGu-----------CCAGCCGG--AG-GGC---GGUG- -5'
14601 3' -63.9 NC_003521.1 + 96073 0.66 0.690406
Target:  5'- cCGCCAGCagccGGGUCaGCUcCUCGUCAUc -3'
miRNA:   3'- cGCGGUCG----UCCAGcCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 85456 0.66 0.651817
Target:  5'- cGCGCCGGCGagaaagguGGUCGucguggugccgguGCCcgcgccCCCGCCGg -3'
miRNA:   3'- -CGCGGUCGU--------CCAGC-------------CGGa-----GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 137924 0.66 0.633829
Target:  5'- -gGCUGGCGGGUCGcGgUUCCCuGCC-Cg -3'
miRNA:   3'- cgCGGUCGUCCAGC-CgGAGGG-CGGuG- -5'
14601 3' -63.9 NC_003521.1 + 92030 0.66 0.649925
Target:  5'- gGCGgCGGUGGGUCcggggguccccgggGuGCCUCCCGUaGCg -3'
miRNA:   3'- -CGCgGUCGUCCAG--------------C-CGGAGGGCGgUG- -5'
14601 3' -63.9 NC_003521.1 + 186630 0.66 0.652762
Target:  5'- -gGCCAGCAgcGGUCGGgcugcuCCUCCgGUugaCACa -3'
miRNA:   3'- cgCGGUCGU--CCAGCC------GGAGGgCG---GUG- -5'
14601 3' -63.9 NC_003521.1 + 170050 0.66 0.633829
Target:  5'- uCGCCAugAGGUUGGCgUUCCCgGUCGCg -3'
miRNA:   3'- cGCGGUcgUCCAGCCG-GAGGG-CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 204140 0.66 0.633829
Target:  5'- gGCGCCGGagcccggccuCAGcUCGGCCgagaCCC-CCACg -3'
miRNA:   3'- -CGCGGUC----------GUCcAGCCGGa---GGGcGGUG- -5'
14601 3' -63.9 NC_003521.1 + 137842 0.66 0.652762
Target:  5'- aCGCC-GCGGcUgGGCCgcCCCGCCAg -3'
miRNA:   3'- cGCGGuCGUCcAgCCGGa-GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 213840 0.66 0.652762
Target:  5'- uCG-CAGCAGuUCGGCCcagUCUCGCUGCa -3'
miRNA:   3'- cGCgGUCGUCcAGCCGG---AGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 93398 0.66 0.652762
Target:  5'- aGCGagauuaCCGGaacguGGUCGuCCUCaCCGCCACg -3'
miRNA:   3'- -CGC------GGUCgu---CCAGCcGGAG-GGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.