miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 166133 0.72 0.342046
Target:  5'- gGCgGCCGGCAGGUCGGCguaguauuuaUCCaggCGCUGCa -3'
miRNA:   3'- -CG-CGGUCGUCCAGCCGg---------AGG---GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 6085 0.72 0.314531
Target:  5'- -gGCCGGUGcGG-CGGCgUUCCGCCACg -3'
miRNA:   3'- cgCGGUCGU-CCaGCCGgAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 56917 0.72 0.319223
Target:  5'- aGCGCCgcagcaccgccuccAGCAccUCGGCCUCgUGCCGCa -3'
miRNA:   3'- -CGCGG--------------UCGUccAGCCGGAGgGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 222643 0.72 0.32125
Target:  5'- aGgGCCGGCAGGcgCGcagcGCCUCCaCGCUGCc -3'
miRNA:   3'- -CgCGGUCGUCCa-GC----CGGAGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 84682 0.72 0.326016
Target:  5'- aGCGCCAGCAGcugcGUgcacaccuccaggcCGGCCUCCggUGCCAg -3'
miRNA:   3'- -CGCGGUCGUC----CA--------------GCCGGAGG--GCGGUg -5'
14601 3' -63.9 NC_003521.1 + 123351 0.72 0.328075
Target:  5'- aGCGCC-GCGGccgUGGCCUCCgacaGCCGCa -3'
miRNA:   3'- -CGCGGuCGUCca-GCCGGAGGg---CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 226362 0.72 0.328075
Target:  5'- aGCGCC-GCGGGagcggCGGCUgacgCCGCCGCa -3'
miRNA:   3'- -CGCGGuCGUCCa----GCCGGag--GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 196438 0.72 0.328075
Target:  5'- uCGCC--CGGGUCGGCCggCUGCCGCg -3'
miRNA:   3'- cGCGGucGUCCAGCCGGagGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 118922 0.72 0.335007
Target:  5'- gGCGCCgcGGCGuGGgcggCGGCgUCCCGUCAg -3'
miRNA:   3'- -CGCGG--UCGU-CCa---GCCGgAGGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 204223 0.73 0.301414
Target:  5'- cGUGCgAGUc-GUCGGCCaCCCGCCGCc -3'
miRNA:   3'- -CGCGgUCGucCAGCCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 10495 0.73 0.288722
Target:  5'- uGCGCCGGCGGGgauggcgUGGCCcCCCagGCgGCg -3'
miRNA:   3'- -CGCGGUCGUCCa------GCCGGaGGG--CGgUG- -5'
14601 3' -63.9 NC_003521.1 + 43472 0.73 0.288722
Target:  5'- cGgGCCAGCGcGG-CGGCCgugCUgGCCGCg -3'
miRNA:   3'- -CgCGGUCGU-CCaGCCGGa--GGgCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 222174 0.8 0.101425
Target:  5'- -gGCCAGCAGGUccgugCGGCC-CCaCGCCACg -3'
miRNA:   3'- cgCGGUCGUCCA-----GCCGGaGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 224096 0.76 0.202007
Target:  5'- cGCGCCGGC-GGUC-GCCgaaCUCGCCGCg -3'
miRNA:   3'- -CGCGGUCGuCCAGcCGGa--GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 100183 0.75 0.226368
Target:  5'- gGCGCCAggcGCAGGcucUCGGCCguguaCCGCUGCa -3'
miRNA:   3'- -CGCGGU---CGUCC---AGCCGGag---GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 69192 0.74 0.242151
Target:  5'- cGCGCUAGaCAuacccgacgucGG-CGGCaCUCCCGCCGCc -3'
miRNA:   3'- -CGCGGUC-GU-----------CCaGCCG-GAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 214344 0.74 0.253174
Target:  5'- cGCGCCAgagagcgcGCAGG-CGGUgCUCCCagGCCACg -3'
miRNA:   3'- -CGCGGU--------CGUCCaGCCG-GAGGG--CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 223657 0.74 0.258839
Target:  5'- aGCuGCCAGCGcugcgccUCGGCCUCgCGCCGCu -3'
miRNA:   3'- -CG-CGGUCGUcc-----AGCCGGAGgGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 153914 0.74 0.258839
Target:  5'- aGCGCCGcguGCAGcuuccacuccUCGGCCaCCCGCCGCg -3'
miRNA:   3'- -CGCGGU---CGUCc---------AGCCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 179067 0.73 0.288722
Target:  5'- aGCGUCAGCGGGUCGcGUg-CCCGUCGu -3'
miRNA:   3'- -CGCGGUCGUCCAGC-CGgaGGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.