miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 178 0.68 0.536356
Target:  5'- cCGCCGGCccGaaacacguccgacCGGCCggCCCGCCGCa -3'
miRNA:   3'- cGCGGUCGucCa------------GCCGGa-GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 4354 0.69 0.512695
Target:  5'- cCGCCGGC-GGUucgcucaucgCGGCCcgcgUCCCGCuCGCu -3'
miRNA:   3'- cGCGGUCGuCCA----------GCCGG----AGGGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 5539 0.66 0.671639
Target:  5'- aCGgCAGCcGGcgCGGCCg-CCGCCAUc -3'
miRNA:   3'- cGCgGUCGuCCa-GCCGGagGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 6085 0.72 0.314531
Target:  5'- -gGCCGGUGcGG-CGGCgUUCCGCCACg -3'
miRNA:   3'- cgCGGUCGU-CCaGCCGgAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 10495 0.73 0.288722
Target:  5'- uGCGCCGGCGGGgauggcgUGGCCcCCCagGCgGCg -3'
miRNA:   3'- -CGCGGUCGUCCa------GCCGGaGGG--CGgUG- -5'
14601 3' -63.9 NC_003521.1 + 16761 0.67 0.605435
Target:  5'- uGCGCuucgccaugCAGCAGGUCGGUUUUCagauGCUGCc -3'
miRNA:   3'- -CGCG---------GUCGUCCAGCCGGAGGg---CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 17063 0.69 0.503708
Target:  5'- aGCGCCGacgauaccGCuGG-CGGCgacccacgUUCCCGCCACc -3'
miRNA:   3'- -CGCGGU--------CGuCCaGCCG--------GAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 18757 0.66 0.671639
Target:  5'- gGCGCCGaCGGGUcgcugcugcgaCGGCUggugcccCCCGCCGa -3'
miRNA:   3'- -CGCGGUcGUCCA-----------GCCGGa------GGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 19133 0.67 0.595997
Target:  5'- cCGCCGGUguaccaGUCGgaguGCCUCCCGaCCACc -3'
miRNA:   3'- cGCGGUCGuc----CAGC----CGGAGGGC-GGUG- -5'
14601 3' -63.9 NC_003521.1 + 21400 0.66 0.665042
Target:  5'- aGCGCUgggauacggcccucuGGCAGcuacUCGGCCUcgucgugCCCGUCGCc -3'
miRNA:   3'- -CGCGG---------------UCGUCc---AGCCGGA-------GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 22185 0.68 0.53086
Target:  5'- gGCGCC-GCcGGccgUGGCCgcuuaCCGCCGCg -3'
miRNA:   3'- -CGCGGuCGuCCa--GCCGGag---GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 22363 0.67 0.62341
Target:  5'- uGCGCCcacGGCGuGGUgcCGGCCauguccuccguggUgCCGCCGCu -3'
miRNA:   3'- -CGCGG---UCGU-CCA--GCCGG-------------AgGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 22539 0.67 0.624357
Target:  5'- aCGCCGGCucccaCGGgCUCCCGUCAa -3'
miRNA:   3'- cGCGGUCGucca-GCCgGAGGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 24558 0.66 0.690406
Target:  5'- -aGCUGGCGcuacuacucGG-CGGCCUCCuCGuCCACc -3'
miRNA:   3'- cgCGGUCGU---------CCaGCCGGAGG-GC-GGUG- -5'
14601 3' -63.9 NC_003521.1 + 24683 0.78 0.147694
Target:  5'- uGCGcCCAGguGGccuuccucugccgCGGCCUCCgCGCCGCg -3'
miRNA:   3'- -CGC-GGUCguCCa------------GCCGGAGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 25065 0.68 0.56784
Target:  5'- cGCGCCcuucAGCGGcaacgcgucGUCGGgCUCCUugcuGCCGCu -3'
miRNA:   3'- -CGCGG----UCGUC---------CAGCCgGAGGG----CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 25147 0.68 0.558525
Target:  5'- gGCGguaCGGCGuucuGGUCGcGCuuucgcugCUCCCGCCGCg -3'
miRNA:   3'- -CGCg--GUCGU----CCAGC-CG--------GAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 30337 0.69 0.477177
Target:  5'- uGCGCCAGCGaGUCGGCggCgCGCacCACa -3'
miRNA:   3'- -CGCGGUCGUcCAGCCGgaGgGCG--GUG- -5'
14601 3' -63.9 NC_003521.1 + 31490 0.66 0.643299
Target:  5'- cGCGUC-GCGGGUUGGCacaggCCCaGCC-Cg -3'
miRNA:   3'- -CGCGGuCGUCCAGCCGga---GGG-CGGuG- -5'
14601 3' -63.9 NC_003521.1 + 31720 0.67 0.586581
Target:  5'- uGCGCguGCuGGgacgccgCGGCCaccgccUCCGCCGCc -3'
miRNA:   3'- -CGCGguCGuCCa------GCCGGa-----GGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.