miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14601 3' -63.9 NC_003521.1 + 216986 1.11 0.000705
Target:  5'- aGCGCCAGCAGGUCGGCCUCCCGCCACg -3'
miRNA:   3'- -CGCGGUCGUCCAGCCGGAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 222174 0.8 0.101425
Target:  5'- -gGCCAGCAGGUccgugCGGCC-CCaCGCCACg -3'
miRNA:   3'- cgCGGUCGUCCA-----GCCGGaGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 139311 0.8 0.106489
Target:  5'- aGCGCCuGCuGGUCGGCCgcgucuggCCGCCGCu -3'
miRNA:   3'- -CGCGGuCGuCCAGCCGGag------GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 24683 0.78 0.147694
Target:  5'- uGCGcCCAGguGGccuuccucugccgCGGCCUCCgCGCCGCg -3'
miRNA:   3'- -CGC-GGUCguCCa------------GCCGGAGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 75043 0.77 0.160065
Target:  5'- aGCGCCAGCGGGcUGGCCUUCgG-CACg -3'
miRNA:   3'- -CGCGGUCGUCCaGCCGGAGGgCgGUG- -5'
14601 3' -63.9 NC_003521.1 + 83214 0.77 0.171749
Target:  5'- uCGaaaCAGCAGcGUaCGGCCUCCCGCaCGCa -3'
miRNA:   3'- cGCg--GUCGUC-CA-GCCGGAGGGCG-GUG- -5'
14601 3' -63.9 NC_003521.1 + 53417 0.77 0.171749
Target:  5'- cGCGUCGGCAGGUCGGCaaggugcggaggCUgUUGCCGCu -3'
miRNA:   3'- -CGCGGUCGUCCAGCCG------------GAgGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 85390 0.76 0.17581
Target:  5'- cGC-CCAGCGGGUCGGCCagCUCGCacaGCu -3'
miRNA:   3'- -CGcGGUCGUCCAGCCGGa-GGGCGg--UG- -5'
14601 3' -63.9 NC_003521.1 + 94942 0.76 0.201544
Target:  5'- cCGCCGGCGGccucgucGUCGGCgCcgCCCGCCGCc -3'
miRNA:   3'- cGCGGUCGUC-------CAGCCG-Ga-GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 224096 0.76 0.202007
Target:  5'- cGCGCCGGC-GGUC-GCCgaaCUCGCCGCg -3'
miRNA:   3'- -CGCGGUCGuCCAGcCGGa--GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 236499 0.75 0.216338
Target:  5'- gGCGCCAgGCAuggacGGUCGaGCC-CCCGCCGu -3'
miRNA:   3'- -CGCGGU-CGU-----CCAGC-CGGaGGGCGGUg -5'
14601 3' -63.9 NC_003521.1 + 100183 0.75 0.226368
Target:  5'- gGCGCCAggcGCAGGcucUCGGCCguguaCCGCUGCa -3'
miRNA:   3'- -CGCGGU---CGUCC---AGCCGGag---GGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 69192 0.74 0.242151
Target:  5'- cGCGCUAGaCAuacccgacgucGG-CGGCaCUCCCGCCGCc -3'
miRNA:   3'- -CGCGGUC-GU-----------CCaGCCG-GAGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 55934 0.74 0.253174
Target:  5'- gGUGCCAGCGGGguaugaGGCCUCUguggaCGCUGCu -3'
miRNA:   3'- -CGCGGUCGUCCag----CCGGAGG-----GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 214344 0.74 0.253174
Target:  5'- cGCGCCAgagagcgcGCAGG-CGGUgCUCCCagGCCACg -3'
miRNA:   3'- -CGCGGU--------CGUCCaGCCG-GAGGG--CGGUG- -5'
14601 3' -63.9 NC_003521.1 + 99740 0.74 0.258839
Target:  5'- aGCaGCCA-CAGGagGGCCUCCaCGUCGCa -3'
miRNA:   3'- -CG-CGGUcGUCCagCCGGAGG-GCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 153914 0.74 0.258839
Target:  5'- aGCGCCGcguGCAGcuuccacuccUCGGCCaCCCGCCGCg -3'
miRNA:   3'- -CGCGGU---CGUCc---------AGCCGGaGGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 223657 0.74 0.258839
Target:  5'- aGCuGCCAGCGcugcgccUCGGCCUCgCGCCGCu -3'
miRNA:   3'- -CG-CGGUCGUcc-----AGCCGGAGgGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 127972 0.74 0.264607
Target:  5'- aGCaGCUggGGCAGcUCGGCCaugacgCCCGCCACg -3'
miRNA:   3'- -CG-CGG--UCGUCcAGCCGGa-----GGGCGGUG- -5'
14601 3' -63.9 NC_003521.1 + 77098 0.74 0.270478
Target:  5'- gGCGCCGcucaucccgacGCAGGauUCGGCCUCguggCCGCCGu -3'
miRNA:   3'- -CGCGGU-----------CGUCC--AGCCGGAG----GGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.