miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 3' -60.2 NC_003521.1 + 120528 0.67 0.785081
Target:  5'- --cGCCCGGGGaagggcccucgGCGGcCGGCgGuCCCGg -3'
miRNA:   3'- cauCGGGUCCU-----------UGUCaGCCGgC-GGGU- -5'
14602 3' -60.2 NC_003521.1 + 123970 0.67 0.785081
Target:  5'- --cGCgCAGGucgucGCGGUCGGCgGCCg- -3'
miRNA:   3'- cauCGgGUCCu----UGUCAGCCGgCGGgu -5'
14602 3' -60.2 NC_003521.1 + 69695 0.67 0.785081
Target:  5'- gGUGGUCCuGGuguCGGUggCGGCgGCCCu -3'
miRNA:   3'- -CAUCGGGuCCuu-GUCA--GCCGgCGGGu -5'
14602 3' -60.2 NC_003521.1 + 123590 0.67 0.785081
Target:  5'- -cGGCgCCGGGAGCcGccgCGGCCGUCa- -3'
miRNA:   3'- caUCG-GGUCCUUGuCa--GCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 204147 0.67 0.785081
Target:  5'- -gAGCCCGGccuCAGcUCGGCCGagaccCCCAc -3'
miRNA:   3'- caUCGGGUCcuuGUC-AGCCGGC-----GGGU- -5'
14602 3' -60.2 NC_003521.1 + 196994 0.67 0.776269
Target:  5'- -gGGCCCGcGGccGGCGG-CGGCUGaCCCGg -3'
miRNA:   3'- caUCGGGU-CC--UUGUCaGCCGGC-GGGU- -5'
14602 3' -60.2 NC_003521.1 + 90072 0.67 0.776269
Target:  5'- --cGCUCGcGGAGCAGUCcgGGCagccgGCCCAg -3'
miRNA:   3'- cauCGGGU-CCUUGUCAG--CCGg----CGGGU- -5'
14602 3' -60.2 NC_003521.1 + 30926 0.67 0.776269
Target:  5'- -cGGUCCuGGGGCAGUCG-CCGUgCCGu -3'
miRNA:   3'- caUCGGGuCCUUGUCAGCcGGCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 141115 0.67 0.767341
Target:  5'- --cGCCUGcGAccuGCAGaagCGGCCGCCCGa -3'
miRNA:   3'- cauCGGGUcCU---UGUCa--GCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 136718 0.67 0.767341
Target:  5'- --cGCCgAGGAugGCAG-CGcGCCGCCUu -3'
miRNA:   3'- cauCGGgUCCU--UGUCaGC-CGGCGGGu -5'
14602 3' -60.2 NC_003521.1 + 100182 0.67 0.767341
Target:  5'- -gGGCgCCAGGcGCAGgcucUCGGCCGUguaCCGc -3'
miRNA:   3'- caUCG-GGUCCuUGUC----AGCCGGCG---GGU- -5'
14602 3' -60.2 NC_003521.1 + 60701 0.67 0.758303
Target:  5'- -gGGaCCCGGGGGCGGcgCgGGUCGCaCCAc -3'
miRNA:   3'- caUC-GGGUCCUUGUCa-G-CCGGCG-GGU- -5'
14602 3' -60.2 NC_003521.1 + 39090 0.67 0.758303
Target:  5'- -gAGCCCAGGAucacccAgGGUUGGCgcaguCGUCCGg -3'
miRNA:   3'- caUCGGGUCCU------UgUCAGCCG-----GCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 92000 0.67 0.758303
Target:  5'- -cGGCCgAGG-GCAGgCGGUCGCCg- -3'
miRNA:   3'- caUCGGgUCCuUGUCaGCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 239318 0.67 0.758303
Target:  5'- -gAGCCCAGGAucacccAgGGUUGGCgcaguCGUCCGg -3'
miRNA:   3'- caUCGGGUCCU------UgUCAGCCG-----GCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 180140 0.67 0.757394
Target:  5'- -aGGUCCAGGAGCAG-CGccaccucGUCGUCCGu -3'
miRNA:   3'- caUCGGGUCCUUGUCaGC-------CGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 56767 0.67 0.743636
Target:  5'- -cAGCUCAGGcugcucauccacuuGCAcaUGGCCGCCCAa -3'
miRNA:   3'- caUCGGGUCCu-------------UGUcaGCCGGCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 204892 0.67 0.739933
Target:  5'- uUGGCCgCGcggcGGGACGGU-GGCCGCCg- -3'
miRNA:   3'- cAUCGG-GU----CCUUGUCAgCCGGCGGgu -5'
14602 3' -60.2 NC_003521.1 + 229375 0.67 0.739005
Target:  5'- aGUAGCCUAGaAACAuGUCGGCgucgguacgaugaCGCUCAa -3'
miRNA:   3'- -CAUCGGGUCcUUGU-CAGCCG-------------GCGGGU- -5'
14602 3' -60.2 NC_003521.1 + 195598 0.68 0.730616
Target:  5'- -cAGCuCCAGGugcGCAGcCGGCcCGCCa- -3'
miRNA:   3'- caUCG-GGUCCu--UGUCaGCCG-GCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.