miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 119575 0.66 0.968945
Target:  5'- gUGagaAGUGCAGGAACACgcugggcggcgGGUGCagcgUCUCg -3'
miRNA:   3'- -ACg--UCGUGUCCUUGUG-----------CCACG----AGAGg -5'
14604 3' -55 NC_003521.1 + 148748 0.66 0.968945
Target:  5'- gUGCAGUGCcucuucauGGAuCugGGUGCcCUCg -3'
miRNA:   3'- -ACGUCGUGu-------CCUuGugCCACGaGAGg -5'
14604 3' -55 NC_003521.1 + 228534 0.66 0.968945
Target:  5'- aGCAGguUGGGAACuguGG-GgUCUCCa -3'
miRNA:   3'- aCGUCguGUCCUUGug-CCaCgAGAGG- -5'
14604 3' -55 NC_003521.1 + 163172 0.66 0.96865
Target:  5'- gGCAGCaauaacagcgGCAGcGGACACGGUgguggcggcggcaGCggcaguagCUCCg -3'
miRNA:   3'- aCGUCG----------UGUC-CUUGUGCCA-------------CGa-------GAGG- -5'
14604 3' -55 NC_003521.1 + 156289 0.66 0.968052
Target:  5'- aGCGGCuGCAGGGcuuGCugugcaaccauauaGCGGUGCaucgcccCUCCa -3'
miRNA:   3'- aCGUCG-UGUCCU---UG--------------UGCCACGa------GAGG- -5'
14604 3' -55 NC_003521.1 + 171296 0.66 0.965897
Target:  5'- cGCGuGgGCuGGAAgGCGGUGCUgggCCu -3'
miRNA:   3'- aCGU-CgUGuCCUUgUGCCACGAga-GG- -5'
14604 3' -55 NC_003521.1 + 177481 0.66 0.965897
Target:  5'- cGCGGCcguggaGguGGGAuCGCaGUcGCUCUCCa -3'
miRNA:   3'- aCGUCG------UguCCUU-GUGcCA-CGAGAGG- -5'
14604 3' -55 NC_003521.1 + 174806 0.66 0.962644
Target:  5'- cUGuCAGCGCcc--ACACGGgGUUCUCCa -3'
miRNA:   3'- -AC-GUCGUGuccuUGUGCCaCGAGAGG- -5'
14604 3' -55 NC_003521.1 + 6493 0.66 0.962644
Target:  5'- gGCAGCGgAGGcgGugACGGcagagGCUCaCCg -3'
miRNA:   3'- aCGUCGUgUCC--UugUGCCa----CGAGaGG- -5'
14604 3' -55 NC_003521.1 + 36017 0.66 0.962644
Target:  5'- aUGCAGUACGGGAugGuccacCGGU-CUUaCCg -3'
miRNA:   3'- -ACGUCGUGUCCUugU-----GCCAcGAGaGG- -5'
14604 3' -55 NC_003521.1 + 183390 0.66 0.962644
Target:  5'- uUGCGGCguGCAGGAGCccguccgcgagACGGUGggCgaCCg -3'
miRNA:   3'- -ACGUCG--UGUCCUUG-----------UGCCACgaGa-GG- -5'
14604 3' -55 NC_003521.1 + 89996 0.66 0.962644
Target:  5'- gGUGGCgcuGCGGGGACACGuUGUUUcggUCCa -3'
miRNA:   3'- aCGUCG---UGUCCUUGUGCcACGAG---AGG- -5'
14604 3' -55 NC_003521.1 + 153900 0.66 0.962644
Target:  5'- cGCGGUAgGGGAACAgcgcCGcGUGCagcUUCCa -3'
miRNA:   3'- aCGUCGUgUCCUUGU----GC-CACGa--GAGG- -5'
14604 3' -55 NC_003521.1 + 61427 0.66 0.962644
Target:  5'- aUGCGGCACcuGAGCgaGCGGcUGCaggUCaUCCg -3'
miRNA:   3'- -ACGUCGUGucCUUG--UGCC-ACG---AG-AGG- -5'
14604 3' -55 NC_003521.1 + 91854 0.66 0.962644
Target:  5'- cGcCAGCACGcGGAugAUGGcGCUgccCUCCn -3'
miRNA:   3'- aC-GUCGUGU-CCUugUGCCaCGA---GAGG- -5'
14604 3' -55 NC_003521.1 + 114221 0.66 0.962644
Target:  5'- gUGCAGguCuuuacguGGAAUcUGGUGCUCagCCa -3'
miRNA:   3'- -ACGUCguGu------CCUUGuGCCACGAGa-GG- -5'
14604 3' -55 NC_003521.1 + 54896 0.66 0.961969
Target:  5'- cGCAGUggcugcgcaccguuuGCAGGAucagcgccggcguggGCAgaaaagugacggUGGUGUUCUCCu -3'
miRNA:   3'- aCGUCG---------------UGUCCU---------------UGU------------GCCACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 28672 0.67 0.960592
Target:  5'- cGCGGCACAuGGACACGGcccuagagaacacccUGCagagUCCg -3'
miRNA:   3'- aCGUCGUGUcCUUGUGCC---------------ACGag--AGG- -5'
14604 3' -55 NC_003521.1 + 92304 0.67 0.960592
Target:  5'- --aGGCGCGGGAggaggcgcagccgcgGCAUGG-GC-CUCCa -3'
miRNA:   3'- acgUCGUGUCCU---------------UGUGCCaCGaGAGG- -5'
14604 3' -55 NC_003521.1 + 36368 0.67 0.959181
Target:  5'- cGUGGCGCGGcuuCGCGuGcUGCUUUCCg -3'
miRNA:   3'- aCGUCGUGUCcuuGUGC-C-ACGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.