miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 186629 0.67 0.839882
Target:  5'- -cGGCCAGCAgCGgucgggcUGCuCCuccgguuGACACAGg -3'
miRNA:   3'- uuCCGGUCGUgGU-------ACG-GGu------CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 120071 0.67 0.835862
Target:  5'- cAGGCCGGCAUCcaggcgcgccaccugGUGCCCcugguGGcCACGGu -3'
miRNA:   3'- uUCCGGUCGUGG---------------UACGGG-----UCuGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 172892 0.67 0.832613
Target:  5'- aGAGcCCAGgGCCAUGUCCAGG-GCGGu -3'
miRNA:   3'- -UUCcGGUCgUGGUACGGGUCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 95170 0.67 0.832613
Target:  5'- cGGGCCgagGGCACCucgcGCUCGG-CGCGGa -3'
miRNA:   3'- uUCCGG---UCGUGGua--CGGGUCuGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 74538 0.67 0.832613
Target:  5'- cGAGGCCAcgcggaccagccGCGCCgugcgcGUGCCCGuGAgCACGGc -3'
miRNA:   3'- -UUCCGGU------------CGUGG------UACGGGU-CU-GUGUC- -5'
14604 5' -58.2 NC_003521.1 + 224035 0.67 0.832613
Target:  5'- cGGGGCgGGCGCCGUcGCCCcugGGACu--- -3'
miRNA:   3'- -UUCCGgUCGUGGUA-CGGG---UCUGuguc -5'
14604 5' -58.2 NC_003521.1 + 127476 0.67 0.832613
Target:  5'- --cGCCAGCGCCGagaUGCgcgucaCCAGuCGCAGg -3'
miRNA:   3'- uucCGGUCGUGGU---ACG------GGUCuGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 124808 0.67 0.832613
Target:  5'- cAGGgCAGCACCAgcucccacuUGCCUAGcgucaGCAGa -3'
miRNA:   3'- uUCCgGUCGUGGU---------ACGGGUCug---UGUC- -5'
14604 5' -58.2 NC_003521.1 + 174059 0.67 0.827688
Target:  5'- uGGGCCGGCGgCAUcacccgcgggaugucGUCCAGuCGCGGc -3'
miRNA:   3'- uUCCGGUCGUgGUA---------------CGGGUCuGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 74981 0.67 0.824371
Target:  5'- --cGCCAGCACaCcUGCCUGGACAUc- -3'
miRNA:   3'- uucCGGUCGUG-GuACGGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 239666 0.67 0.824371
Target:  5'- uAGG-CGGCGCCGUGgcuCCCGGGgACGGc -3'
miRNA:   3'- uUCCgGUCGUGGUAC---GGGUCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 54498 0.67 0.824371
Target:  5'- -uGGCCGGCgGCCcgGCgUGGAC-CAGg -3'
miRNA:   3'- uuCCGGUCG-UGGuaCGgGUCUGuGUC- -5'
14604 5' -58.2 NC_003521.1 + 112988 0.67 0.824371
Target:  5'- cGGGCUGGCGCCGggGCCCuucCACGa -3'
miRNA:   3'- uUCCGGUCGUGGUa-CGGGucuGUGUc -5'
14604 5' -58.2 NC_003521.1 + 39439 0.67 0.824371
Target:  5'- uAGG-CGGCGCCGUGgcuCCCGGGgACGGc -3'
miRNA:   3'- uUCCgGUCGUGGUAC---GGGUCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 186743 0.67 0.824371
Target:  5'- uAGGCgAGC-CCAUGCUgGGGCuCGGc -3'
miRNA:   3'- uUCCGgUCGuGGUACGGgUCUGuGUC- -5'
14604 5' -58.2 NC_003521.1 + 56028 0.67 0.824371
Target:  5'- gGAGGCgGcCACCAgggcGUCCAGGCGCGc -3'
miRNA:   3'- -UUCCGgUcGUGGUa---CGGGUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 166253 0.67 0.824371
Target:  5'- -cGGCgAGCggGCCGUGCUCacGGGCACGc -3'
miRNA:   3'- uuCCGgUCG--UGGUACGGG--UCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 221164 0.67 0.824371
Target:  5'- -cGGcCCAGCGCagcaGcCCCAGGCACAc -3'
miRNA:   3'- uuCC-GGUCGUGgua-C-GGGUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 227605 0.67 0.824371
Target:  5'- cAGGCUugGGCGCCGgucgGCCCuccaACACGGc -3'
miRNA:   3'- uUCCGG--UCGUGGUa---CGGGuc--UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 191247 0.67 0.815961
Target:  5'- gGAGG-CGGCGCCGcgGCCCAcGCgGCAGg -3'
miRNA:   3'- -UUCCgGUCGUGGUa-CGGGUcUG-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.