miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 79039 0.67 0.928834
Target:  5'- --uGGCCgGCGUGaCAGACauggcgUAGGggGUc -3'
miRNA:   3'- cauCUGGgCGCAC-GUCUG------GUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 86608 0.67 0.928834
Target:  5'- -aAGcGCUCGUGguggcgGUAGAgCAGGAAGCc -3'
miRNA:   3'- caUC-UGGGCGCa-----CGUCUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 34458 0.67 0.928834
Target:  5'- -cGGGCCUGgGggucgucgccGCAGGCCAgcagcucgcGGAAGCa -3'
miRNA:   3'- caUCUGGGCgCa---------CGUCUGGU---------CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 16544 0.67 0.928833
Target:  5'- -cGGACCCuGCGUGC--ACCuGGGugagGGCg -3'
miRNA:   3'- caUCUGGG-CGCACGucUGGuCCU----UCG- -5'
14605 3' -55.9 NC_003521.1 + 98591 0.67 0.928833
Target:  5'- -cGGGCCCGCGagcGCAgcGACgAGGccauGGCg -3'
miRNA:   3'- caUCUGGGCGCa--CGU--CUGgUCCu---UCG- -5'
14605 3' -55.9 NC_003521.1 + 145445 0.67 0.923622
Target:  5'- gGUGGACCUgugcuucgGCGUGCucaaGCaGGGggGCa -3'
miRNA:   3'- -CAUCUGGG--------CGCACGuc--UGgUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 188664 0.67 0.923622
Target:  5'- -cGGACCCGCGguaccgucgcUGaCGGGCgGGGGAuacGCg -3'
miRNA:   3'- caUCUGGGCGC----------AC-GUCUGgUCCUU---CG- -5'
14605 3' -55.9 NC_003521.1 + 165958 0.67 0.923622
Target:  5'- --cGugUCGUGcucggGCAGGCUgAGGAAGCg -3'
miRNA:   3'- cauCugGGCGCa----CGUCUGG-UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 26452 0.67 0.923622
Target:  5'- cGUGG-CCUGCaacgGCGuGGCCuGGGAGCa -3'
miRNA:   3'- -CAUCuGGGCGca--CGU-CUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 226350 0.67 0.918185
Target:  5'- --cGcCCCGCGgGUAGcGCCGcGGGAGCg -3'
miRNA:   3'- cauCuGGGCGCaCGUC-UGGU-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 216348 0.67 0.918185
Target:  5'- aGUAGAUCCaGCacgcGCuGGCCAGGcaGAGCa -3'
miRNA:   3'- -CAUCUGGG-CGca--CGuCUGGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 214463 0.67 0.918184
Target:  5'- -gAGACUgcuucuacaGCGUGCuGGACCGcuGGAAGCc -3'
miRNA:   3'- caUCUGGg--------CGCACG-UCUGGU--CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 107907 0.67 0.918184
Target:  5'- -gAGACCCGUaaggaUGUAGACCAacucGGAguGGCc -3'
miRNA:   3'- caUCUGGGCGc----ACGUCUGGU----CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 97846 0.67 0.918184
Target:  5'- gGUGcGACagagagGgGUGCGGGCCAGGGAGa -3'
miRNA:   3'- -CAU-CUGgg----CgCACGUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 228627 0.67 0.917628
Target:  5'- -gAGAacCCCGCG-GCgcgcaaaccaccaAGACCAGGAucaguaGGCa -3'
miRNA:   3'- caUCU--GGGCGCaCG-------------UCUGGUCCU------UCG- -5'
14605 3' -55.9 NC_003521.1 + 72980 0.67 0.917628
Target:  5'- aGUAGccgacgaGCCCGCG-GCGGucgugcCCGGGggGg -3'
miRNA:   3'- -CAUC-------UGGGCGCaCGUCu-----GGUCCuuCg -5'
14605 3' -55.9 NC_003521.1 + 110876 0.68 0.914813
Target:  5'- --cGGCCCGCG-GCAGaacugcgccgucucgGCCAGGuguucGCg -3'
miRNA:   3'- cauCUGGGCGCaCGUC---------------UGGUCCuu---CG- -5'
14605 3' -55.9 NC_003521.1 + 78897 0.68 0.912521
Target:  5'- -gGGuCCaCGCGggccucGUAGACgGGGAAGCc -3'
miRNA:   3'- caUCuGG-GCGCa-----CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 36770 0.68 0.912521
Target:  5'- -aGGACgCGCGUggccugGCGGGCguGGAGGa -3'
miRNA:   3'- caUCUGgGCGCA------CGUCUGguCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 153454 0.68 0.912521
Target:  5'- cGUAGGCCaGCGgcucGCAGGCCAcguacacgcGGAuGCc -3'
miRNA:   3'- -CAUCUGGgCGCa---CGUCUGGU---------CCUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.