miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 87744 0.66 0.947417
Target:  5'- gGUGGGCCC-CGgccCGGGCCccggcggcggAGGAGGCc -3'
miRNA:   3'- -CAUCUGGGcGCac-GUCUGG----------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 190600 0.66 0.946147
Target:  5'- aGUGGcCCCGCGaccugacuucgcgcUcuucggGCGGACCggacAGGAGGCg -3'
miRNA:   3'- -CAUCuGGGCGC--------------A------CGUCUGG----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 207058 0.67 0.943108
Target:  5'- -cAGGCCggagGCGuUGCAGGgCAGGAgacGGCu -3'
miRNA:   3'- caUCUGGg---CGC-ACGUCUgGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 102033 0.67 0.943108
Target:  5'- cUGGGCCacgGCGcGCAGcacgGCCGGGuuGAGCa -3'
miRNA:   3'- cAUCUGGg--CGCaCGUC----UGGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 172375 0.67 0.943108
Target:  5'- -cGGGCaCCGUGUGUuccAUCAGGAAGg -3'
miRNA:   3'- caUCUG-GGCGCACGuc-UGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 115361 0.67 0.943108
Target:  5'- -gAGGUCaCGCGUcGCuGGCCAGGGccGGCa -3'
miRNA:   3'- caUCUGG-GCGCA-CGuCUGGUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 115195 0.67 0.943108
Target:  5'- -gAGuACCUGC-UGCGGGCCAaGGAcuGCa -3'
miRNA:   3'- caUC-UGGGCGcACGUCUGGU-CCUu-CG- -5'
14605 3' -55.9 NC_003521.1 + 214373 0.67 0.943108
Target:  5'- -cAGGCCaCGCcguUGCAGGCCAcGAacAGCg -3'
miRNA:   3'- caUCUGG-GCGc--ACGUCUGGUcCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 196993 0.67 0.943108
Target:  5'- -cGGGCCCGCGgccggcggcgGCuGACCcGGcuGCu -3'
miRNA:   3'- caUCUGGGCGCa---------CGuCUGGuCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 16577 0.67 0.938576
Target:  5'- ---cGCCUGCGagGC-GACCGGGGAGg -3'
miRNA:   3'- caucUGGGCGCa-CGuCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 120928 0.67 0.938576
Target:  5'- -cGGcuGCCCGCGgcgGCggcuccggcgaGGGgCAGGggGCg -3'
miRNA:   3'- caUC--UGGGCGCa--CG-----------UCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 51543 0.67 0.938576
Target:  5'- aGUGGGUCCGCaucuUGguGGCUcGGAGGCg -3'
miRNA:   3'- -CAUCUGGGCGc---ACguCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 96779 0.67 0.938575
Target:  5'- --cGGCCaugcagaaGCGccGCAGACCggaacgGGGAAGCg -3'
miRNA:   3'- cauCUGGg-------CGCa-CGUCUGG------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 99317 0.67 0.938575
Target:  5'- -cAGGUCCGgGacgagGCGGGCCAGGuGGGCa -3'
miRNA:   3'- caUCUGGGCgCa----CGUCUGGUCC-UUCG- -5'
14605 3' -55.9 NC_003521.1 + 238488 0.67 0.933818
Target:  5'- --cGGCCCaGgGUcaGCAGccCCAGGAGGCc -3'
miRNA:   3'- cauCUGGG-CgCA--CGUCu-GGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 103492 0.67 0.933818
Target:  5'- -cGGGCCCGCGUGaUAGGugaacUCGGGGucgccgcgcAGCa -3'
miRNA:   3'- caUCUGGGCGCAC-GUCU-----GGUCCU---------UCG- -5'
14605 3' -55.9 NC_003521.1 + 38260 0.67 0.933818
Target:  5'- --cGGCCCaGgGUcaGCAGccCCAGGAGGCc -3'
miRNA:   3'- cauCUGGG-CgCA--CGUCu-GGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 150420 0.67 0.933818
Target:  5'- -cGGACCCGUcUGUcgcGugCAGGAgAGCg -3'
miRNA:   3'- caUCUGGGCGcACGu--CugGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 132303 0.67 0.931851
Target:  5'- cGUGGAggccaacaaaaucuCCCGCGUGCgccugcgGGugCuaguGGAAGUg -3'
miRNA:   3'- -CAUCU--------------GGGCGCACG-------UCugGu---CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 79039 0.67 0.928834
Target:  5'- --uGGCCgGCGUGaCAGACauggcgUAGGggGUc -3'
miRNA:   3'- cauCUGGgCGCAC-GUCUG------GUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.