miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 88778 0.66 0.958672
Target:  5'- -cGGACCUGCGggugaagcaccgcUGCGGcCUGGuGAAGCc -3'
miRNA:   3'- caUCUGGGCGC-------------ACGUCuGGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 49819 0.66 0.958672
Target:  5'- cUGGGCgCCGUgcagugcgccGUGCAGAcggccguCCAGGuGGCg -3'
miRNA:   3'- cAUCUG-GGCG----------CACGUCU-------GGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 24405 0.66 0.958672
Target:  5'- -cGGGCCCGCGgaGCAuagaaagccagacGGCgCAGGGgccGGCg -3'
miRNA:   3'- caUCUGGGCGCa-CGU-------------CUG-GUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 272 0.66 0.955374
Target:  5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3'
miRNA:   3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 181394 0.66 0.955374
Target:  5'- -cAGA-CCGUGUccgacggaGguGACCAGGAAGa -3'
miRNA:   3'- caUCUgGGCGCA--------CguCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 196239 0.66 0.955374
Target:  5'- -aGGugUCGCGcGCuGACCAGaAAGUa -3'
miRNA:   3'- caUCugGGCGCaCGuCUGGUCcUUCG- -5'
14605 3' -55.9 NC_003521.1 + 28342 0.66 0.955374
Target:  5'- --cGGCCauguGCGUGUGGGCCAcGGGccuGGCc -3'
miRNA:   3'- cauCUGGg---CGCACGUCUGGU-CCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 200500 0.66 0.955374
Target:  5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3'
miRNA:   3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 13979 0.66 0.954996
Target:  5'- aUGGGCCugcccggCGCGgcgGCGGGCgAGGAccccauGGCg -3'
miRNA:   3'- cAUCUGG-------GCGCa--CGUCUGgUCCU------UCG- -5'
14605 3' -55.9 NC_003521.1 + 215029 0.66 0.951504
Target:  5'- -cAGAgCCGUcucgugaaaGUGCgacaGGGCCAGGcAGGCg -3'
miRNA:   3'- caUCUgGGCG---------CACG----UCUGGUCC-UUCG- -5'
14605 3' -55.9 NC_003521.1 + 198015 0.66 0.951504
Target:  5'- -gAGAUUgccguugcggCGCGUGCAGccGCCGGGcuGCa -3'
miRNA:   3'- caUCUGG----------GCGCACGUC--UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 180225 0.66 0.951504
Target:  5'- gGUGGuGCCgCGCGUGUGGGCCucGAAcuGCu -3'
miRNA:   3'- -CAUC-UGG-GCGCACGUCUGGucCUU--CG- -5'
14605 3' -55.9 NC_003521.1 + 116686 0.66 0.951504
Target:  5'- ---uGCCCGUcgucgGUGgAGGCCucGGAAGCg -3'
miRNA:   3'- caucUGGGCG-----CACgUCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 91527 0.66 0.951504
Target:  5'- gGUGGGCggaGCGU-C-GACCGGGGAGCc -3'
miRNA:   3'- -CAUCUGgg-CGCAcGuCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 128138 0.66 0.951106
Target:  5'- gGgcGGCCCGCGcucggcgaaggccUGCAGG-CAGGgcGUg -3'
miRNA:   3'- -CauCUGGGCGC-------------ACGUCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 222701 0.66 0.947417
Target:  5'- gGUGcGGCCgGgCGUGCGGAucaCCAGGuugAGGCc -3'
miRNA:   3'- -CAU-CUGGgC-GCACGUCU---GGUCC---UUCG- -5'
14605 3' -55.9 NC_003521.1 + 127067 0.66 0.947417
Target:  5'- -cGGugCCGCG-GCAgGGCCAccgacGaGAGGCg -3'
miRNA:   3'- caUCugGGCGCaCGU-CUGGU-----C-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87012 0.66 0.947417
Target:  5'- -aGGGCCa-CGUGCuggauGACCAGGAAc- -3'
miRNA:   3'- caUCUGGgcGCACGu----CUGGUCCUUcg -5'
14605 3' -55.9 NC_003521.1 + 87744 0.66 0.947417
Target:  5'- gGUGGGCCC-CGgccCGGGCCccggcggcggAGGAGGCc -3'
miRNA:   3'- -CAUCUGGGcGCac-GUCUGG----------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 37409 0.66 0.947417
Target:  5'- -cGGGCCU-UGUGCGacGGCCuGGGAGGCg -3'
miRNA:   3'- caUCUGGGcGCACGU--CUGG-UCCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.