miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 168796 0.72 0.738694
Target:  5'- -aGGACCUG-GUGCAGGCCAcGcGGCg -3'
miRNA:   3'- caUCUGGGCgCACGUCUGGUcCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 97297 0.71 0.766774
Target:  5'- cGgcGGCgCGCGUGCGGAUCAGGc--- -3'
miRNA:   3'- -CauCUGgGCGCACGUCUGGUCCuucg -5'
14605 3' -55.9 NC_003521.1 + 232567 0.71 0.766774
Target:  5'- -gGGGCugCUGUGUGguGAgCGGGggGCg -3'
miRNA:   3'- caUCUG--GGCGCACguCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 219835 0.71 0.766774
Target:  5'- -gAGACCCGgauccaGUGCGGGCCcgagagcaugAGGAucAGCa -3'
miRNA:   3'- caUCUGGGCg-----CACGUCUGG----------UCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 19144 0.71 0.766774
Target:  5'- -gAGACCCacgGCGUGguGACCGa-GAGCa -3'
miRNA:   3'- caUCUGGG---CGCACguCUGGUccUUCG- -5'
14605 3' -55.9 NC_003521.1 + 219898 0.71 0.766774
Target:  5'- --cGACCCGCGUGCgauugAGACCgguccccgGGGAccuGCu -3'
miRNA:   3'- cauCUGGGCGCACG-----UCUGG--------UCCUu--CG- -5'
14605 3' -55.9 NC_003521.1 + 229235 0.71 0.775918
Target:  5'- aGUGGACCCGCG----GGCCGcGGAGGUg -3'
miRNA:   3'- -CAUCUGGGCGCacguCUGGU-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 37459 0.71 0.775918
Target:  5'- uGUGGGCUCGCGcGCGGGCCAccguGGugccGCa -3'
miRNA:   3'- -CAUCUGGGCGCaCGUCUGGU----CCuu--CG- -5'
14605 3' -55.9 NC_003521.1 + 77657 0.71 0.775918
Target:  5'- uUGGAacugCCGuCGggagacaGCAGGCCGGGggGCa -3'
miRNA:   3'- cAUCUg---GGC-GCa------CGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 196076 0.71 0.792949
Target:  5'- gGUGGACUgGCGcgagagcUGCAGACCccGGAucAGCg -3'
miRNA:   3'- -CAUCUGGgCGC-------ACGUCUGGu-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 54502 0.71 0.793832
Target:  5'- cGgcGGCCCgGCGU--GGACCAGGAucuGCa -3'
miRNA:   3'- -CauCUGGG-CGCAcgUCUGGUCCUu--CG- -5'
14605 3' -55.9 NC_003521.1 + 174123 0.7 0.802585
Target:  5'- -cAGACCCucaggGgGUcGCAGcCCAGGAGGUa -3'
miRNA:   3'- caUCUGGG-----CgCA-CGUCuGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 69715 0.7 0.802585
Target:  5'- cGgcGGCCCugagguacGCGguaacgGCGGGCgGGGAGGCg -3'
miRNA:   3'- -CauCUGGG--------CGCa-----CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 5370 0.7 0.810338
Target:  5'- -aGGGCCCGCGcguucuuccauuUGCAGACgGguugcucGGggGCc -3'
miRNA:   3'- caUCUGGGCGC------------ACGUCUGgU-------CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 155491 0.7 0.819645
Target:  5'- --cGGCCUGCG-GCGGGCCGcGGGccaaGGCu -3'
miRNA:   3'- cauCUGGGCGCaCGUCUGGU-CCU----UCG- -5'
14605 3' -55.9 NC_003521.1 + 60690 0.7 0.819645
Target:  5'- --cGGCCgCGCG-GgGGACCcGGggGCg -3'
miRNA:   3'- cauCUGG-GCGCaCgUCUGGuCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 86370 0.7 0.827936
Target:  5'- --uGACCaacaGCGUGCGGAagGGGAAGa -3'
miRNA:   3'- cauCUGGg---CGCACGUCUggUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 224844 0.7 0.827936
Target:  5'- aUGGACUCG-GUGUAGAgCAGGccguAGCg -3'
miRNA:   3'- cAUCUGGGCgCACGUCUgGUCCu---UCG- -5'
14605 3' -55.9 NC_003521.1 + 104437 0.7 0.835253
Target:  5'- --cGGCCCGCGgccgaggUGgAGugUAGGAAGUc -3'
miRNA:   3'- cauCUGGGCGC-------ACgUCugGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 149069 0.69 0.844003
Target:  5'- -gGGACCCGCGggGUAGGgUAGGcaGGGUg -3'
miRNA:   3'- caUCUGGGCGCa-CGUCUgGUCC--UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.