miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 217527 1.12 0.00301
Target:  5'- uGUAGACCCGCGUGCAGACCAGGAAGCg -3'
miRNA:   3'- -CAUCUGGGCGCACGUCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 186159 0.81 0.285334
Target:  5'- --cGGCCUGCGUGCAcGGCCAGGAcaucgugcgcgagAGCg -3'
miRNA:   3'- cauCUGGGCGCACGU-CUGGUCCU-------------UCG- -5'
14605 3' -55.9 NC_003521.1 + 61583 0.79 0.334508
Target:  5'- -gAGACgCGCGUGCAGAacucgcugCAGGggGCg -3'
miRNA:   3'- caUCUGgGCGCACGUCUg-------GUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 110652 0.77 0.42229
Target:  5'- -gAGAUCgCGCGgcagGCAGGCCAGGGcguAGCg -3'
miRNA:   3'- caUCUGG-GCGCa---CGUCUGGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 91939 0.76 0.513007
Target:  5'- gGUGGACCCgGCG-GCGGACCccguGGcGGCg -3'
miRNA:   3'- -CAUCUGGG-CGCaCGUCUGGu---CCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 174162 0.76 0.52254
Target:  5'- -aAGACCCGCaUGCAGAUCuccuGGAuGCg -3'
miRNA:   3'- caUCUGGGCGcACGUCUGGu---CCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 20291 0.75 0.571115
Target:  5'- gGUGGaucucGCCgGCGccaUGCAGcACCAGGAGGCc -3'
miRNA:   3'- -CAUC-----UGGgCGC---ACGUC-UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 46397 0.75 0.571115
Target:  5'- -gGGugCgugggGCGcGCGGGCCAGGAAGCg -3'
miRNA:   3'- caUCugGg----CGCaCGUCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 149150 0.75 0.571115
Target:  5'- -aGGAgCCCGC-UGCGGaaugcGCCAGGGAGCc -3'
miRNA:   3'- caUCU-GGGCGcACGUC-----UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 5807 0.74 0.590871
Target:  5'- cGUAaACCCGCGUccGCggAGGCCAGGggGa -3'
miRNA:   3'- -CAUcUGGGCGCA--CG--UCUGGUCCuuCg -5'
14605 3' -55.9 NC_003521.1 + 211452 0.73 0.660555
Target:  5'- --cGGCCuCGCGgucgggGCAGGCCAuGAGGCg -3'
miRNA:   3'- cauCUGG-GCGCa-----CGUCUGGUcCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 167384 0.73 0.677417
Target:  5'- cGUGGugCCgaaagagcucgucgGCGUGCAGGuCgGGGAAGUg -3'
miRNA:   3'- -CAUCugGG--------------CGCACGUCU-GgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 67821 0.73 0.680383
Target:  5'- -aAGcAUCCGCGUGCAGcGgCAGGAAcGCg -3'
miRNA:   3'- caUC-UGGGCGCACGUC-UgGUCCUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 24601 0.72 0.690244
Target:  5'- cGUAGGCCUcgucuGCGUGU--GCCAGGAGGa -3'
miRNA:   3'- -CAUCUGGG-----CGCACGucUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 109366 0.72 0.690244
Target:  5'- -aGGACUCguccaGCGgcagGCAGGCCAGGucGCg -3'
miRNA:   3'- caUCUGGG-----CGCa---CGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 26015 0.72 0.700059
Target:  5'- -cAGACCCaUGUGCAGAaacUCGGuGAAGCa -3'
miRNA:   3'- caUCUGGGcGCACGUCU---GGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 187282 0.72 0.70982
Target:  5'- --cGGCCCGCGUuucuuucgGCAGcCCGguGGGAGCg -3'
miRNA:   3'- cauCUGGGCGCA--------CGUCuGGU--CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 124089 0.72 0.719518
Target:  5'- -cGGGCCCGaCG-GCGuGGgCGGGAAGCa -3'
miRNA:   3'- caUCUGGGC-GCaCGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 112069 0.72 0.719518
Target:  5'- -aGGACgCCGCgGUGgGGAUCAGGGgcGGCu -3'
miRNA:   3'- caUCUG-GGCG-CACgUCUGGUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 48685 0.72 0.726265
Target:  5'- cGUGGAUCCGCGgacGCcgacggagccgacgAGGCCGGGAgaGGUg -3'
miRNA:   3'- -CAUCUGGGCGCa--CG--------------UCUGGUCCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.