miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 87753 0.66 0.959028
Target:  5'- -gAGACCagcuGCGgacagguggcGCAGGCCAGGGccaGGUg -3'
miRNA:   3'- caUCUGGg---CGCa---------CGUCUGGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 129842 0.66 0.963463
Target:  5'- -gGGGCCCGUGgccgugcccugcuacUGCGacgagugggugacGGCCGGGGAGg -3'
miRNA:   3'- caUCUGGGCGC---------------ACGU-------------CUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 195616 0.66 0.964437
Target:  5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3'
miRNA:   3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 116686 0.66 0.951504
Target:  5'- ---uGCCCGUcgucgGUGgAGGCCucGGAAGCg -3'
miRNA:   3'- caucUGGGCG-----CACgUCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 234981 0.66 0.959028
Target:  5'- -gAGGCCUaCGUGCGGucCCAGcGGuAGCg -3'
miRNA:   3'- caUCUGGGcGCACGUCu-GGUC-CU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 200500 0.66 0.955374
Target:  5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3'
miRNA:   3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 221650 0.66 0.96379
Target:  5'- ---cGCCCGCGguguaGcCAGGCCucucuuucgguggucGGGAGGCa -3'
miRNA:   3'- caucUGGGCGCa----C-GUCUGG---------------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 181394 0.66 0.955374
Target:  5'- -cAGA-CCGUGUccgacggaGguGACCAGGAAGa -3'
miRNA:   3'- caUCUgGGCGCA--------CguCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 24405 0.66 0.958672
Target:  5'- -cGGGCCCGCGgaGCAuagaaagccagacGGCgCAGGGgccGGCg -3'
miRNA:   3'- caUCUGGGCGCa-CGU-------------CUG-GUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 87012 0.66 0.947417
Target:  5'- -aGGGCCa-CGUGCuggauGACCAGGAAc- -3'
miRNA:   3'- caUCUGGgcGCACGu----CUGGUCCUUcg -5'
14605 3' -55.9 NC_003521.1 + 104238 0.66 0.962136
Target:  5'- cGUGGAgCUGCGcgagcUGCAGGCCuuccucgAGGAgaacuucaAGCa -3'
miRNA:   3'- -CAUCUgGGCGC-----ACGUCUGG-------UCCU--------UCG- -5'
14605 3' -55.9 NC_003521.1 + 190600 0.66 0.946147
Target:  5'- aGUGGcCCCGCGaccugacuucgcgcUcuucggGCGGACCggacAGGAGGCg -3'
miRNA:   3'- -CAUCuGGGCGC--------------A------CGUCUGG----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 91853 0.66 0.959028
Target:  5'- ----cCCCuccaggGCG-GCGGACCAGGAcGGCg -3'
miRNA:   3'- caucuGGG------CGCaCGUCUGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 124918 0.66 0.96043
Target:  5'- -gGGGCCCGUGUucagcacgguguacaGCAGuCCGuGGGugGGCa -3'
miRNA:   3'- caUCUGGGCGCA---------------CGUCuGGU-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 128138 0.66 0.951106
Target:  5'- gGgcGGCCCGCGcucggcgaaggccUGCAGG-CAGGgcGUg -3'
miRNA:   3'- -CauCUGGGCGC-------------ACGUCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 66654 0.66 0.959028
Target:  5'- --cGACCuucgugCGCGgccUGCAGGCCcuGGAGCg -3'
miRNA:   3'- cauCUGG------GCGC---ACGUCUGGucCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 177180 0.66 0.965708
Target:  5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3'
miRNA:   3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 91527 0.66 0.951504
Target:  5'- gGUGGGCggaGCGU-C-GACCGGGGAGCc -3'
miRNA:   3'- -CAUCUGgg-CGCAcGuCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 110336 0.66 0.961799
Target:  5'- -aAGGCCaCGCGUGacaggucgccgaAGAgCAGGAGcGCu -3'
miRNA:   3'- caUCUGG-GCGCACg-----------UCUgGUCCUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 222701 0.66 0.947417
Target:  5'- gGUGcGGCCgGgCGUGCGGAucaCCAGGuugAGGCc -3'
miRNA:   3'- -CAU-CUGGgC-GCACGUCU---GGUCC---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.