miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 223102 0.69 0.849457
Target:  5'- cGUAGAUCUGCGggaugGCGGccgucucgcgcagcACCAGG-AGCc -3'
miRNA:   3'- -CAUCUGGGCGCa----CGUC--------------UGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 232567 0.71 0.766774
Target:  5'- -gGGGCugCUGUGUGguGAgCGGGggGCg -3'
miRNA:   3'- caUCUG--GGCGCACguCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 77657 0.71 0.775918
Target:  5'- uUGGAacugCCGuCGggagacaGCAGGCCGGGggGCa -3'
miRNA:   3'- cAUCUg---GGC-GCa------CGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 37459 0.71 0.775918
Target:  5'- uGUGGGCUCGCGcGCGGGCCAccguGGugccGCa -3'
miRNA:   3'- -CAUCUGGGCGCaCGUCUGGU----CCuu--CG- -5'
14605 3' -55.9 NC_003521.1 + 54502 0.71 0.793832
Target:  5'- cGgcGGCCCgGCGU--GGACCAGGAucuGCa -3'
miRNA:   3'- -CauCUGGG-CGCAcgUCUGGUCCUu--CG- -5'
14605 3' -55.9 NC_003521.1 + 174123 0.7 0.802585
Target:  5'- -cAGACCCucaggGgGUcGCAGcCCAGGAGGUa -3'
miRNA:   3'- caUCUGGG-----CgCA-CGUCuGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 60690 0.7 0.819645
Target:  5'- --cGGCCgCGCG-GgGGACCcGGggGCg -3'
miRNA:   3'- cauCUGG-GCGCaCgUCUGGuCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 224844 0.7 0.827936
Target:  5'- aUGGACUCG-GUGUAGAgCAGGccguAGCg -3'
miRNA:   3'- cAUCUGGGCgCACGUCUgGUCCu---UCG- -5'
14605 3' -55.9 NC_003521.1 + 104437 0.7 0.835253
Target:  5'- --cGGCCCGCGgccgaggUGgAGugUAGGAAGUc -3'
miRNA:   3'- cauCUGGGCGC-------ACgUCugGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 219835 0.71 0.766774
Target:  5'- -gAGACCCGgauccaGUGCGGGCCcgagagcaugAGGAucAGCa -3'
miRNA:   3'- caUCUGGGCg-----CACGUCUGG----------UCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 19144 0.71 0.766774
Target:  5'- -gAGACCCacgGCGUGguGACCGa-GAGCa -3'
miRNA:   3'- caUCUGGG---CGCACguCUGGUccUUCG- -5'
14605 3' -55.9 NC_003521.1 + 124089 0.72 0.719518
Target:  5'- -cGGGCCCGaCG-GCGuGGgCGGGAAGCa -3'
miRNA:   3'- caUCUGGGC-GCaCGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 61583 0.79 0.334508
Target:  5'- -gAGACgCGCGUGCAGAacucgcugCAGGggGCg -3'
miRNA:   3'- caUCUGgGCGCACGUCUg-------GUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 91939 0.76 0.513007
Target:  5'- gGUGGACCCgGCG-GCGGACCccguGGcGGCg -3'
miRNA:   3'- -CAUCUGGG-CGCaCGUCUGGu---CCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 174162 0.76 0.52254
Target:  5'- -aAGACCCGCaUGCAGAUCuccuGGAuGCg -3'
miRNA:   3'- caUCUGGGCGcACGUCUGGu---CCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 67821 0.73 0.680383
Target:  5'- -aAGcAUCCGCGUGCAGcGgCAGGAAcGCg -3'
miRNA:   3'- caUC-UGGGCGCACGUC-UgGUCCUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 109366 0.72 0.690244
Target:  5'- -aGGACUCguccaGCGgcagGCAGGCCAGGucGCg -3'
miRNA:   3'- caUCUGGG-----CGCa---CGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 26015 0.72 0.700059
Target:  5'- -cAGACCCaUGUGCAGAaacUCGGuGAAGCa -3'
miRNA:   3'- caUCUGGGcGCACGUCU---GGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 187282 0.72 0.70982
Target:  5'- --cGGCCCGCGUuucuuucgGCAGcCCGguGGGAGCg -3'
miRNA:   3'- cauCUGGGCGCA--------CGUCuGGU--CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 112069 0.72 0.719518
Target:  5'- -aGGACgCCGCgGUGgGGAUCAGGGgcGGCu -3'
miRNA:   3'- caUCUG-GGCG-CACgUCUGGUCCU--UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.