Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 223102 | 0.69 | 0.849457 |
Target: 5'- cGUAGAUCUGCGggaugGCGGccgucucgcgcagcACCAGG-AGCc -3' miRNA: 3'- -CAUCUGGGCGCa----CGUC--------------UGGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 232567 | 0.71 | 0.766774 |
Target: 5'- -gGGGCugCUGUGUGguGAgCGGGggGCg -3' miRNA: 3'- caUCUG--GGCGCACguCUgGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 77657 | 0.71 | 0.775918 |
Target: 5'- uUGGAacugCCGuCGggagacaGCAGGCCGGGggGCa -3' miRNA: 3'- cAUCUg---GGC-GCa------CGUCUGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 37459 | 0.71 | 0.775918 |
Target: 5'- uGUGGGCUCGCGcGCGGGCCAccguGGugccGCa -3' miRNA: 3'- -CAUCUGGGCGCaCGUCUGGU----CCuu--CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 54502 | 0.71 | 0.793832 |
Target: 5'- cGgcGGCCCgGCGU--GGACCAGGAucuGCa -3' miRNA: 3'- -CauCUGGG-CGCAcgUCUGGUCCUu--CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 174123 | 0.7 | 0.802585 |
Target: 5'- -cAGACCCucaggGgGUcGCAGcCCAGGAGGUa -3' miRNA: 3'- caUCUGGG-----CgCA-CGUCuGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 60690 | 0.7 | 0.819645 |
Target: 5'- --cGGCCgCGCG-GgGGACCcGGggGCg -3' miRNA: 3'- cauCUGG-GCGCaCgUCUGGuCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 224844 | 0.7 | 0.827936 |
Target: 5'- aUGGACUCG-GUGUAGAgCAGGccguAGCg -3' miRNA: 3'- cAUCUGGGCgCACGUCUgGUCCu---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 104437 | 0.7 | 0.835253 |
Target: 5'- --cGGCCCGCGgccgaggUGgAGugUAGGAAGUc -3' miRNA: 3'- cauCUGGGCGC-------ACgUCugGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 219835 | 0.71 | 0.766774 |
Target: 5'- -gAGACCCGgauccaGUGCGGGCCcgagagcaugAGGAucAGCa -3' miRNA: 3'- caUCUGGGCg-----CACGUCUGG----------UCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 19144 | 0.71 | 0.766774 |
Target: 5'- -gAGACCCacgGCGUGguGACCGa-GAGCa -3' miRNA: 3'- caUCUGGG---CGCACguCUGGUccUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 124089 | 0.72 | 0.719518 |
Target: 5'- -cGGGCCCGaCG-GCGuGGgCGGGAAGCa -3' miRNA: 3'- caUCUGGGC-GCaCGU-CUgGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 61583 | 0.79 | 0.334508 |
Target: 5'- -gAGACgCGCGUGCAGAacucgcugCAGGggGCg -3' miRNA: 3'- caUCUGgGCGCACGUCUg-------GUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 91939 | 0.76 | 0.513007 |
Target: 5'- gGUGGACCCgGCG-GCGGACCccguGGcGGCg -3' miRNA: 3'- -CAUCUGGG-CGCaCGUCUGGu---CCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 174162 | 0.76 | 0.52254 |
Target: 5'- -aAGACCCGCaUGCAGAUCuccuGGAuGCg -3' miRNA: 3'- caUCUGGGCGcACGUCUGGu---CCUuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 67821 | 0.73 | 0.680383 |
Target: 5'- -aAGcAUCCGCGUGCAGcGgCAGGAAcGCg -3' miRNA: 3'- caUC-UGGGCGCACGUC-UgGUCCUU-CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 109366 | 0.72 | 0.690244 |
Target: 5'- -aGGACUCguccaGCGgcagGCAGGCCAGGucGCg -3' miRNA: 3'- caUCUGGG-----CGCa---CGUCUGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 26015 | 0.72 | 0.700059 |
Target: 5'- -cAGACCCaUGUGCAGAaacUCGGuGAAGCa -3' miRNA: 3'- caUCUGGGcGCACGUCU---GGUC-CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 187282 | 0.72 | 0.70982 |
Target: 5'- --cGGCCCGCGUuucuuucgGCAGcCCGguGGGAGCg -3' miRNA: 3'- cauCUGGGCGCA--------CGUCuGGU--CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 112069 | 0.72 | 0.719518 |
Target: 5'- -aGGACgCCGCgGUGgGGAUCAGGGgcGGCu -3' miRNA: 3'- caUCUG-GGCG-CACgUCUGGUCCU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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