miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 272 0.66 0.955374
Target:  5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3'
miRNA:   3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 5370 0.7 0.810338
Target:  5'- -aGGGCCCGCGcguucuuccauuUGCAGACgGguugcucGGggGCc -3'
miRNA:   3'- caUCUGGGCGC------------ACGUCUGgU-------CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 5807 0.74 0.590871
Target:  5'- cGUAaACCCGCGUccGCggAGGCCAGGggGa -3'
miRNA:   3'- -CAUcUGGGCGCA--CG--UCUGGUCCuuCg -5'
14605 3' -55.9 NC_003521.1 + 6818 0.66 0.962471
Target:  5'- -cGGAgCCGauc-CAGACCAGGAGGg -3'
miRNA:   3'- caUCUgGGCgcacGUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 7982 0.66 0.962136
Target:  5'- -aGGGUCCGCGgcgGCGGgggagguACCGGGGcAGCg -3'
miRNA:   3'- caUCUGGGCGCa--CGUC-------UGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 13901 0.68 0.906631
Target:  5'- -gGGGCCCgGCGcggaGgGGGCCGcGGAGGCc -3'
miRNA:   3'- caUCUGGG-CGCa---CgUCUGGU-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 13979 0.66 0.954996
Target:  5'- aUGGGCCugcccggCGCGgcgGCGGGCgAGGAccccauGGCg -3'
miRNA:   3'- cAUCUGG-------GCGCa--CGUCUGgUCCU------UCG- -5'
14605 3' -55.9 NC_003521.1 + 16544 0.67 0.928833
Target:  5'- -cGGACCCuGCGUGC--ACCuGGGugagGGCg -3'
miRNA:   3'- caUCUGGG-CGCACGucUGGuCCU----UCG- -5'
14605 3' -55.9 NC_003521.1 + 16577 0.67 0.938576
Target:  5'- ---cGCCUGCGagGC-GACCGGGGAGg -3'
miRNA:   3'- caucUGGGCGCa-CGuCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 18649 0.69 0.86672
Target:  5'- cGUGGGgCCGCacggaccUGCuGGCCAcGGggGCg -3'
miRNA:   3'- -CAUCUgGGCGc------ACGuCUGGU-CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 19144 0.71 0.766774
Target:  5'- -gAGACCCacgGCGUGguGACCGa-GAGCa -3'
miRNA:   3'- caUCUGGG---CGCACguCUGGUccUUCG- -5'
14605 3' -55.9 NC_003521.1 + 20291 0.75 0.571115
Target:  5'- gGUGGaucucGCCgGCGccaUGCAGcACCAGGAGGCc -3'
miRNA:   3'- -CAUC-----UGGgCGC---ACGUC-UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 20998 0.68 0.894187
Target:  5'- cUGGAUCCGgGUcucggaGGGCCuGGAGGCg -3'
miRNA:   3'- cAUCUGGGCgCAcg----UCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 24405 0.66 0.958672
Target:  5'- -cGGGCCCGCGgaGCAuagaaagccagacGGCgCAGGGgccGGCg -3'
miRNA:   3'- caUCUGGGCGCa-CGU-------------CUG-GUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 24601 0.72 0.690244
Target:  5'- cGUAGGCCUcgucuGCGUGU--GCCAGGAGGa -3'
miRNA:   3'- -CAUCUGGG-----CGCACGucUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 26015 0.72 0.700059
Target:  5'- -cAGACCCaUGUGCAGAaacUCGGuGAAGCa -3'
miRNA:   3'- caUCUGGGcGCACGUCU---GGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 26452 0.67 0.923622
Target:  5'- cGUGG-CCUGCaacgGCGuGGCCuGGGAGCa -3'
miRNA:   3'- -CAUCuGGGCGca--CGU-CUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 28342 0.66 0.955374
Target:  5'- --cGGCCauguGCGUGUGGGCCAcGGGccuGGCc -3'
miRNA:   3'- cauCUGGg---CGCACGUCUGGU-CCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 34458 0.67 0.928834
Target:  5'- -cGGGCCUGgGggucgucgccGCAGGCCAgcagcucgcGGAAGCa -3'
miRNA:   3'- caUCUGGGCgCa---------CGUCUGGU---------CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 35961 0.68 0.906631
Target:  5'- --uGACCUGCGUGCccgAGAuCCGGGuGGa -3'
miRNA:   3'- cauCUGGGCGCACG---UCU-GGUCCuUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.