Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 28342 | 0.66 | 0.955374 |
Target: 5'- --cGGCCauguGCGUGUGGGCCAcGGGccuGGCc -3' miRNA: 3'- cauCUGGg---CGCACGUCUGGU-CCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 80039 | 0.66 | 0.959028 |
Target: 5'- -aAGACCCGCGcccGCGuGCCGccGGcGGCa -3' miRNA: 3'- caUCUGGGCGCa--CGUcUGGU--CCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 54173 | 0.66 | 0.947417 |
Target: 5'- -gGGGCCCcUGUGUcaACCGGaGGAGCa -3' miRNA: 3'- caUCUGGGcGCACGucUGGUC-CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 88778 | 0.66 | 0.958672 |
Target: 5'- -cGGACCUGCGggugaagcaccgcUGCGGcCUGGuGAAGCc -3' miRNA: 3'- caUCUGGGCGC-------------ACGUCuGGUC-CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 49819 | 0.66 | 0.958672 |
Target: 5'- cUGGGCgCCGUgcagugcgccGUGCAGAcggccguCCAGGuGGCg -3' miRNA: 3'- cAUCUG-GGCG----------CACGUCU-------GGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 45734 | 0.66 | 0.962471 |
Target: 5'- -gGGACgCGgGU-CAGGCCGGGuuuuguAGCg -3' miRNA: 3'- caUCUGgGCgCAcGUCUGGUCCu-----UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 127067 | 0.66 | 0.947417 |
Target: 5'- -cGGugCCGCG-GCAgGGCCAccgacGaGAGGCg -3' miRNA: 3'- caUCugGGCGCaCGU-CUGGU-----C-CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 7982 | 0.66 | 0.962136 |
Target: 5'- -aGGGUCCGCGgcgGCGGgggagguACCGGGGcAGCg -3' miRNA: 3'- caUCUGGGCGCa--CGUC-------UGGUCCU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 180225 | 0.66 | 0.951504 |
Target: 5'- gGUGGuGCCgCGCGUGUGGGCCucGAAcuGCu -3' miRNA: 3'- -CAUC-UGG-GCGCACGUCUGGucCUU--CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 272 | 0.66 | 0.955374 |
Target: 5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3' miRNA: 3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 100967 | 0.66 | 0.962471 |
Target: 5'- --cGACCCGCaguucGUGCAGAUCAac-AGCu -3' miRNA: 3'- cauCUGGGCG-----CACGUCUGGUccuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 6818 | 0.66 | 0.962471 |
Target: 5'- -cGGAgCCGauc-CAGACCAGGAGGg -3' miRNA: 3'- caUCUgGGCgcacGUCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 173229 | 0.66 | 0.959028 |
Target: 5'- aGUAGcuuGCCCGCGUGUuggcgacucuGGCCcGcGggGCc -3' miRNA: 3'- -CAUC---UGGGCGCACGu---------CUGGuC-CuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 196239 | 0.66 | 0.955374 |
Target: 5'- -aGGugUCGCGcGCuGACCAGaAAGUa -3' miRNA: 3'- caUCugGGCGCaCGuCUGGUCcUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 37409 | 0.66 | 0.947417 |
Target: 5'- -cGGGCCU-UGUGCGacGGCCuGGGAGGCg -3' miRNA: 3'- caUCUGGGcGCACGU--CUGG-UCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 13979 | 0.66 | 0.954996 |
Target: 5'- aUGGGCCugcccggCGCGgcgGCGGGCgAGGAccccauGGCg -3' miRNA: 3'- cAUCUGG-------GCGCa--CGUCUGgUCCU------UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 198015 | 0.66 | 0.951504 |
Target: 5'- -gAGAUUgccguugcggCGCGUGCAGccGCCGGGcuGCa -3' miRNA: 3'- caUCUGG----------GCGCACGUC--UGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 180891 | 0.66 | 0.962136 |
Target: 5'- --uGAUCgGCGUccacgucGgAGACCAGGAAGg -3' miRNA: 3'- cauCUGGgCGCA-------CgUCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 150773 | 0.66 | 0.962471 |
Target: 5'- uGUGcGCUCGCGcgacgacggGCGGgcgcgagccGCCAGGggGCg -3' miRNA: 3'- -CAUcUGGGCGCa--------CGUC---------UGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 177180 | 0.66 | 0.965708 |
Target: 5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3' miRNA: 3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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