miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 5' -57 NC_003521.1 + 67521 0.66 0.938575
Target:  5'- gUCGCUgagcaaGCUGUUcUGGgacuCGGAGAUCAUg -3'
miRNA:   3'- -AGCGAg-----CGGCAGuACC----GCCUCUAGUA- -5'
14605 5' -57 NC_003521.1 + 6023 0.66 0.937177
Target:  5'- aUCGCugUCGUCGUCGUaccacucgcucucgGGCGGuagcGGGUCGa -3'
miRNA:   3'- -AGCG--AGCGGCAGUA--------------CCGCC----UCUAGUa -5'
14605 5' -57 NC_003521.1 + 178948 0.66 0.933838
Target:  5'- cUGCUCGCUaucCGUGGUGGucGUCAUg -3'
miRNA:   3'- aGCGAGCGGca-GUACCGCCucUAGUA- -5'
14605 5' -57 NC_003521.1 + 135905 0.66 0.933352
Target:  5'- gCGCUCGUCGUCAUcgucgucGGaCGGcagcaggcugGGAUCGa -3'
miRNA:   3'- aGCGAGCGGCAGUA-------CC-GCC----------UCUAGUa -5'
14605 5' -57 NC_003521.1 + 38912 0.66 0.928876
Target:  5'- gCGUcccCGCCcuguGUCGUGGCGGcaguAGAUCGUu -3'
miRNA:   3'- aGCGa--GCGG----CAGUACCGCC----UCUAGUA- -5'
14605 5' -57 NC_003521.1 + 167590 0.67 0.912642
Target:  5'- cCGCUgcuguUGCCGcUCGUGGUGGcguuGGUCGUc -3'
miRNA:   3'- aGCGA-----GCGGC-AGUACCGCCu---CUAGUA- -5'
14605 5' -57 NC_003521.1 + 21755 0.67 0.903162
Target:  5'- cUCGCUgcucaugcaccugggCGCCGUggcgugccugucCGUGGCGGuGAUCc- -3'
miRNA:   3'- -AGCGA---------------GCGGCA------------GUACCGCCuCUAGua -5'
14605 5' -57 NC_003521.1 + 169563 0.67 0.894405
Target:  5'- cCGCcucCGCCGaUguUGGCGG-GAUCGUg -3'
miRNA:   3'- aGCGa--GCGGC-AguACCGCCuCUAGUA- -5'
14605 5' -57 NC_003521.1 + 74073 0.67 0.881165
Target:  5'- gCGC-CGCUGUC-UGGCGGgcgAGGUCu- -3'
miRNA:   3'- aGCGaGCGGCAGuACCGCC---UCUAGua -5'
14605 5' -57 NC_003521.1 + 94181 0.68 0.874229
Target:  5'- cUCGC-CGUCGUCGUGGcCGGGGc---- -3'
miRNA:   3'- -AGCGaGCGGCAGUACC-GCCUCuagua -5'
14605 5' -57 NC_003521.1 + 33041 0.68 0.867091
Target:  5'- -aGCUguaGCCGUCGUccgggggagaGGCGGAGAcaUCGUc -3'
miRNA:   3'- agCGAg--CGGCAGUA----------CCGCCUCU--AGUA- -5'
14605 5' -57 NC_003521.1 + 140807 0.68 0.859753
Target:  5'- cUGCUgCGUCGUCugGUGGUGGAGAa--- -3'
miRNA:   3'- aGCGA-GCGGCAG--UACCGCCUCUagua -5'
14605 5' -57 NC_003521.1 + 23566 0.68 0.852222
Target:  5'- cUC-CUCGuCCGUCAUGGUGGuGggCGc -3'
miRNA:   3'- -AGcGAGC-GGCAGUACCGCCuCuaGUa -5'
14605 5' -57 NC_003521.1 + 135356 0.68 0.852222
Target:  5'- cCGCgcgCGCCGUCuccgcGGCGGuuAUCGc -3'
miRNA:   3'- aGCGa--GCGGCAGua---CCGCCucUAGUa -5'
14605 5' -57 NC_003521.1 + 148915 0.68 0.836603
Target:  5'- cCGC-CGCCGUCcUGGaucCGGGGGUCc- -3'
miRNA:   3'- aGCGaGCGGCAGuACC---GCCUCUAGua -5'
14605 5' -57 NC_003521.1 + 153946 0.69 0.820284
Target:  5'- cCGCcgCGCCGUCAUGGUGucGAaCAg -3'
miRNA:   3'- aGCGa-GCGGCAGUACCGCcuCUaGUa -5'
14605 5' -57 NC_003521.1 + 5678 0.69 0.820284
Target:  5'- gCGCUCGgaGUcCGUGGUGGcGAUCAc -3'
miRNA:   3'- aGCGAGCggCA-GUACCGCCuCUAGUa -5'
14605 5' -57 NC_003521.1 + 207718 0.69 0.81188
Target:  5'- cCGCUaCGCCGUCAucggcUGGCuGGAGccCGUg -3'
miRNA:   3'- aGCGA-GCGGCAGU-----ACCG-CCUCuaGUA- -5'
14605 5' -57 NC_003521.1 + 164954 0.69 0.79198
Target:  5'- cUCGCgUCGCCGgagagggcccucuuUCAUGGaggacggacUGGAGAUCAUc -3'
miRNA:   3'- -AGCG-AGCGGC--------------AGUACC---------GCCUCUAGUA- -5'
14605 5' -57 NC_003521.1 + 166988 0.7 0.785777
Target:  5'- -gGUUCGCgGUCAgGGCGGAGuuggCGUa -3'
miRNA:   3'- agCGAGCGgCAGUaCCGCCUCua--GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.