miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 129673 0.66 0.953322
Target:  5'- --gCGCUauGCGGAccguCCCGUGGCCccaGCGg -3'
miRNA:   3'- agaGUGG--CGUCUuu--GGGCACCGG---UGC- -5'
14606 3' -56.5 NC_003521.1 + 54533 0.66 0.949379
Target:  5'- --gCGCCGCuGggGCCCGgcGGCUuuuugACGu -3'
miRNA:   3'- agaGUGGCGuCuuUGGGCa-CCGG-----UGC- -5'
14606 3' -56.5 NC_003521.1 + 167845 0.66 0.949379
Target:  5'- --cCGCCGCGG--GCUCGUcGGCUACu -3'
miRNA:   3'- agaGUGGCGUCuuUGGGCA-CCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 138682 0.66 0.949379
Target:  5'- cCUCACCgGCGacAAGgCCGUGaGCCugGg -3'
miRNA:   3'- aGAGUGG-CGUc-UUUgGGCAC-CGGugC- -5'
14606 3' -56.5 NC_003521.1 + 86590 0.66 0.949379
Target:  5'- --aCGCCGCagccggggaAGAAgcGCUCGUGGUgGCGg -3'
miRNA:   3'- agaGUGGCG---------UCUU--UGGGCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 102501 0.66 0.949379
Target:  5'- gUCgcgcaGCCGCAGGu-CCaUGUcGGCCACGa -3'
miRNA:   3'- -AGag---UGGCGUCUuuGG-GCA-CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 208927 0.66 0.949379
Target:  5'- ---uGCCGCAGuu-CCUGUG-CCGCGg -3'
miRNA:   3'- agagUGGCGUCuuuGGGCACcGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 97246 0.66 0.949379
Target:  5'- gUC-CGCgGUAGAcGCCCGUGcCCGCc -3'
miRNA:   3'- -AGaGUGgCGUCUuUGGGCACcGGUGc -5'
14606 3' -56.5 NC_003521.1 + 100226 0.66 0.945221
Target:  5'- cCUCGaaGCGGAGcguCUCGccGGCCGCGa -3'
miRNA:   3'- aGAGUggCGUCUUu--GGGCa-CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 171591 0.66 0.945221
Target:  5'- -aUCACCaGCAccagcGGAACCCGagcGGCgGCGg -3'
miRNA:   3'- agAGUGG-CGU-----CUUUGGGCa--CCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 90367 0.66 0.945221
Target:  5'- gCUCGCCGCcccagaccaggAGGAcCCCG-GGCgCGCu -3'
miRNA:   3'- aGAGUGGCG-----------UCUUuGGGCaCCG-GUGc -5'
14606 3' -56.5 NC_003521.1 + 191070 0.66 0.945221
Target:  5'- gUUC-CCGCGGcGACCgugGUGGCgGCGg -3'
miRNA:   3'- aGAGuGGCGUCuUUGGg--CACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 74181 0.66 0.945221
Target:  5'- aCUgCGCCGCGGc-GCCCGgcgcgcGGCC-CGa -3'
miRNA:   3'- aGA-GUGGCGUCuuUGGGCa-----CCGGuGC- -5'
14606 3' -56.5 NC_003521.1 + 225977 0.66 0.940845
Target:  5'- -aUCACCGUAGAcACCUGUuaCCGCu -3'
miRNA:   3'- agAGUGGCGUCUuUGGGCAccGGUGc -5'
14606 3' -56.5 NC_003521.1 + 32411 0.66 0.940845
Target:  5'- --aCACaGCA---GCCCGUGGCgCACGg -3'
miRNA:   3'- agaGUGgCGUcuuUGGGCACCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 101987 0.66 0.940845
Target:  5'- aUCUgGCCGCAGG---CCGUaGCCGCc -3'
miRNA:   3'- -AGAgUGGCGUCUuugGGCAcCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 151019 0.66 0.940845
Target:  5'- --aCACgGCgcaagucucgGGGAACCgCGUGGUCGCGu -3'
miRNA:   3'- agaGUGgCG----------UCUUUGG-GCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 190327 0.66 0.940845
Target:  5'- aUCUCcaccGCCGCcGAcACgCUGUGGCaCGCGc -3'
miRNA:   3'- -AGAG----UGGCGuCUuUG-GGCACCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 48671 0.66 0.940845
Target:  5'- --aCACCGCAGAccuaCGUGGauCCGCGg -3'
miRNA:   3'- agaGUGGCGUCUuuggGCACC--GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 104871 0.67 0.936249
Target:  5'- cCUCAugUCGCAGgcGCCCGaGGCguCGc -3'
miRNA:   3'- aGAGU--GGCGUCuuUGGGCaCCGguGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.