miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 32411 0.66 0.940845
Target:  5'- --aCACaGCA---GCCCGUGGCgCACGg -3'
miRNA:   3'- agaGUGgCGUcuuUGGGCACCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 36439 0.68 0.880917
Target:  5'- ---gGCCGCGGAGAcgaguugcgcucgcuCCUG-GGCCGCGa -3'
miRNA:   3'- agagUGGCGUCUUU---------------GGGCaCCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 36757 0.73 0.649463
Target:  5'- cUCUCGCUGUccaaGGAcGCgCGUGGCCugGc -3'
miRNA:   3'- -AGAGUGGCG----UCUuUGgGCACCGGugC- -5'
14606 3' -56.5 NC_003521.1 + 37464 0.67 0.921131
Target:  5'- gCUCGCgCGCGGGccaCCGUGguGCCGCa -3'
miRNA:   3'- aGAGUG-GCGUCUuugGGCAC--CGGUGc -5'
14606 3' -56.5 NC_003521.1 + 37694 0.66 0.957052
Target:  5'- aUCUCGgcuccggcUCGCAGAGugCCuuUGGCCAgGc -3'
miRNA:   3'- -AGAGU--------GGCGUCUUugGGc-ACCGGUgC- -5'
14606 3' -56.5 NC_003521.1 + 40542 0.72 0.705192
Target:  5'- --cCGCCGCGGAAACcgguuCCGUgacucaccgaucccGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCUUUG-----GGCA--------------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 41622 0.69 0.859626
Target:  5'- gCUgACCGUGGucuggggcguggcGCCCGUGGUCAUGa -3'
miRNA:   3'- aGAgUGGCGUCuu-----------UGGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 43159 0.68 0.897254
Target:  5'- aUCUCACCGCuauggcaGGAGACUgggaCGUG-CCGCa -3'
miRNA:   3'- -AGAGUGGCG-------UCUUUGG----GCACcGGUGc -5'
14606 3' -56.5 NC_003521.1 + 43463 0.68 0.884957
Target:  5'- cUCUCACagcgggccagCGCGGcgGCCgUGcUGGCCGCGg -3'
miRNA:   3'- -AGAGUG----------GCGUCuuUGG-GC-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 44562 0.75 0.522756
Target:  5'- aCUCACCGCGGguACCCGgaaCCACa -3'
miRNA:   3'- aGAGUGGCGUCuuUGGGCaccGGUGc -5'
14606 3' -56.5 NC_003521.1 + 44870 0.69 0.871204
Target:  5'- --cCGCUGCcaGAGCCUGUGGcCCACGc -3'
miRNA:   3'- agaGUGGCGucUUUGGGCACC-GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 47082 0.69 0.840565
Target:  5'- --cCACgCGCAGGAACUCcuucaugGUGGCCGCc -3'
miRNA:   3'- agaGUG-GCGUCUUUGGG-------CACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 48627 0.7 0.800116
Target:  5'- gUC-CGCCGaC-GAAACCCaaaccgguGUGGCCGCGa -3'
miRNA:   3'- -AGaGUGGC-GuCUUUGGG--------CACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 48671 0.66 0.940845
Target:  5'- --aCACCGCAGAccuaCGUGGauCCGCGg -3'
miRNA:   3'- agaGUGGCGUCUuuggGCACC--GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 48773 0.69 0.856654
Target:  5'- --cCGCCGCGGAcGCCgCGUcuGCCGCGc -3'
miRNA:   3'- agaGUGGCGUCUuUGG-GCAc-CGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 49765 0.67 0.931432
Target:  5'- -gUCGCCGCGGGAACagaacugagCGUcGGCCAg- -3'
miRNA:   3'- agAGUGGCGUCUUUGg--------GCA-CCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 54533 0.66 0.949379
Target:  5'- --gCGCCGCuGggGCCCGgcGGCUuuuugACGu -3'
miRNA:   3'- agaGUGGCGuCuuUGGGCa-CCGG-----UGC- -5'
14606 3' -56.5 NC_003521.1 + 60288 0.68 0.891525
Target:  5'- --aCGCCGCGGAGA-CgGUGGUgACGa -3'
miRNA:   3'- agaGUGGCGUCUUUgGgCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 60678 0.68 0.891525
Target:  5'- cUCUUcgugcugcgGCCGCgcgGGGGACCCGggGGCgGCGc -3'
miRNA:   3'- -AGAG---------UGGCG---UCUUUGGGCa-CCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 61848 0.69 0.870495
Target:  5'- -gUCACCGCcGAAAUCCaccgccgcgucuuGUGGUCGCa -3'
miRNA:   3'- agAGUGGCGuCUUUGGG-------------CACCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.