miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 220 0.72 0.705192
Target:  5'- --cCGCCGCGGAAACcgguuCCGUgacucaccgaucccGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCUUUG-----GGCA--------------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 1079 0.74 0.569845
Target:  5'- cUCUCGCCGCGc-GACCCcuggaucgugcugGUGGCCACc -3'
miRNA:   3'- -AGAGUGGCGUcuUUGGG-------------CACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 7959 0.67 0.931432
Target:  5'- -aUCGCCGCGGugucgcGGCCgGgagGGuCCGCGg -3'
miRNA:   3'- agAGUGGCGUCu-----UUGGgCa--CC-GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 8261 0.67 0.936249
Target:  5'- gCUCACCacacaGCAGcc-CCCGUaguaGGCCACc -3'
miRNA:   3'- aGAGUGG-----CGUCuuuGGGCA----CCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 11577 0.69 0.871204
Target:  5'- cCUCACCGCAagcaccuccGcgGCCCGcgGGuCCACu -3'
miRNA:   3'- aGAGUGGCGU---------CuuUGGGCa-CC-GGUGc -5'
14606 3' -56.5 NC_003521.1 + 13891 0.76 0.494671
Target:  5'- aUUUCGCCG-GGggGCCCGgcgcggagggGGCCGCGg -3'
miRNA:   3'- -AGAGUGGCgUCuuUGGGCa---------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 14473 0.67 0.921131
Target:  5'- gCUC-CCGCGGcgcuACCCGcggGGCgCGCGc -3'
miRNA:   3'- aGAGuGGCGUCuu--UGGGCa--CCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 16002 0.68 0.878183
Target:  5'- aUCUaccgccaGCCGCAGAcGCCCuacGCCACGc -3'
miRNA:   3'- -AGAg------UGGCGUCUuUGGGcacCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 16989 0.67 0.915648
Target:  5'- ---aGCCGCAGGGacagcaggcGCCCGcggUGGCgGCGg -3'
miRNA:   3'- agagUGGCGUCUU---------UGGGC---ACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 18053 0.67 0.909362
Target:  5'- cCUCugCGCcGAccccaccGACgCCGUGGCCGu- -3'
miRNA:   3'- aGAGugGCGuCU-------UUG-GGCACCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 18487 0.69 0.849093
Target:  5'- -gUCGCCuGgAGGAgcuGCCCGUGuGCCACc -3'
miRNA:   3'- agAGUGG-CgUCUU---UGGGCAC-CGGUGc -5'
14606 3' -56.5 NC_003521.1 + 18654 0.75 0.561103
Target:  5'- ---gGCCGCAcGGACCUGcUGGCCACGg -3'
miRNA:   3'- agagUGGCGUcUUUGGGC-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 19509 0.68 0.882272
Target:  5'- cUCUCAgcugUCGCGGGacuacuggcccucgGACCCGaggaucggggucuUGGCCGCGu -3'
miRNA:   3'- -AGAGU----GGCGUCU--------------UUGGGC-------------ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 22186 0.66 0.953322
Target:  5'- --gCGCCGCcGG---CCGUGGCCGCu -3'
miRNA:   3'- agaGUGGCGuCUuugGGCACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 22496 0.68 0.884957
Target:  5'- --aCACCgGCAcca--CCGUGGCCACGg -3'
miRNA:   3'- agaGUGG-CGUcuuugGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 23303 0.68 0.89788
Target:  5'- gUCU-GCaCGCGGGucuacAGCaCCGUGGCCAUGc -3'
miRNA:   3'- -AGAgUG-GCGUCU-----UUG-GGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 23911 0.69 0.841349
Target:  5'- cUUCACCacGCAGGAcucgcacgacaaGCUgGUGGCCugGa -3'
miRNA:   3'- aGAGUGG--CGUCUU------------UGGgCACCGGugC- -5'
14606 3' -56.5 NC_003521.1 + 29339 0.67 0.909362
Target:  5'- -gUUACCGCugccacgcgcacuGGAcggagugcgAACCCGcGGCCGCGg -3'
miRNA:   3'- agAGUGGCG-------------UCU---------UUGGGCaCCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 32062 0.71 0.755363
Target:  5'- ---gACUaCAGAccacguacuGGCCCGUGGCCACGg -3'
miRNA:   3'- agagUGGcGUCU---------UUGGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 32205 0.74 0.580573
Target:  5'- cCUCACCGCGGuGACUgGcuaUGGCCGCc -3'
miRNA:   3'- aGAGUGGCGUCuUUGGgC---ACCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.