miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 119613 0.7 0.791417
Target:  5'- gUCUCguGCUGCAGGuggacguuuACCCacUGGCCGCGg -3'
miRNA:   3'- -AGAG--UGGCGUCUu--------UGGGc-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 137422 0.72 0.714818
Target:  5'- cCUCAUguacgccaccagcgCGCAGGAGCCCGUGGagguaUCGCGc -3'
miRNA:   3'- aGAGUG--------------GCGUCUUUGGGCACC-----GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 73697 0.72 0.731029
Target:  5'- gCUCAagagcuucguggagCGCAGcGACCCG-GGCCGCGa -3'
miRNA:   3'- aGAGUg-------------GCGUCuUUGGGCaCCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 139063 0.71 0.736698
Target:  5'- --gCGCCGCAGAucACCC-UGGCCuCGg -3'
miRNA:   3'- agaGUGGCGUCUu-UGGGcACCGGuGC- -5'
14606 3' -56.5 NC_003521.1 + 116001 0.71 0.746077
Target:  5'- gUCUCG-CGCAGGAGCagCGUcuccaGGCCGCGg -3'
miRNA:   3'- -AGAGUgGCGUCUUUGg-GCA-----CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 113629 0.71 0.755363
Target:  5'- gCUCAgCCGCGucAAcCCCGUGGCCGa- -3'
miRNA:   3'- aGAGU-GGCGUcuUU-GGGCACCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 32062 0.71 0.755363
Target:  5'- ---gACUaCAGAccacguacuGGCCCGUGGCCACGg -3'
miRNA:   3'- agagUGGcGUCU---------UUGGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 192824 0.71 0.755363
Target:  5'- ---aGCCGCAGAAGCCCGgcGG-CGCGu -3'
miRNA:   3'- agagUGGCGUCUUUGGGCa-CCgGUGC- -5'
14606 3' -56.5 NC_003521.1 + 153520 0.71 0.761804
Target:  5'- gCUCGCUGCGcaccuucuuGAAcacgcgcaccucggGCCCGuUGGCCACGc -3'
miRNA:   3'- aGAGUGGCGU---------CUU--------------UGGGC-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 240769 0.72 0.705192
Target:  5'- --cCGCCGCGGAAACcgguuCCGUgacucaccgaucccGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCUUUG-----GGCA--------------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 220 0.72 0.705192
Target:  5'- --cCGCCGCGGAAACcgguuCCGUgacucaccgaucccGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCUUUG-----GGCA--------------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 197393 0.72 0.688699
Target:  5'- gCUCGCCGCccGGGACUgGgugucUGGCCACGa -3'
miRNA:   3'- aGAGUGGCGu-CUUUGGgC-----ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 213739 0.81 0.281706
Target:  5'- --gCGCCGCAGAAGgCCGUGGUgGCGg -3'
miRNA:   3'- agaGUGGCGUCUUUgGGCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 83745 0.75 0.532256
Target:  5'- cCUCACCGCGGggGgCCugggacaggGUGGCgGCGc -3'
miRNA:   3'- aGAGUGGCGUCuuUgGG---------CACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 153072 0.75 0.561103
Target:  5'- cCUcCGCCGCcGggGCCCG-GGCCGgGg -3'
miRNA:   3'- aGA-GUGGCGuCuuUGGGCaCCGGUgC- -5'
14606 3' -56.5 NC_003521.1 + 201307 0.74 0.569845
Target:  5'- cUCUCGCCGCGc-GACCCcuggaucgugcugGUGGCCACc -3'
miRNA:   3'- -AGAGUGGCGUcuUUGGG-------------CACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 73094 0.74 0.60313
Target:  5'- --cCACCGCAGcgccacgcaauccaCCGUGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCuuug----------GGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 129835 0.73 0.629738
Target:  5'- ---uGCUGCuGggGCCCGUGGCCGu- -3'
miRNA:   3'- agagUGGCGuCuuUGGGCACCGGUgc -5'
14606 3' -56.5 NC_003521.1 + 72835 0.73 0.629738
Target:  5'- gCUCACCGCGacGGCCUGgGGCgGCGa -3'
miRNA:   3'- aGAGUGGCGUcuUUGGGCaCCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 36757 0.73 0.649463
Target:  5'- cUCUCGCUGUccaaGGAcGCgCGUGGCCugGc -3'
miRNA:   3'- -AGAGUGGCG----UCUuUGgGCACCGGugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.