Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14606 | 3' | -56.5 | NC_003521.1 | + | 101934 | 0.81 | 0.263096 |
Target: 5'- aCUCGCCGguGggGuCCaCGUGGCCGCc -3' miRNA: 3'- aGAGUGGCguCuuU-GG-GCACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 185304 | 0.72 | 0.678936 |
Target: 5'- gCUCGCUGCGcguACCCGUGGUCAa- -3' miRNA: 3'- aGAGUGGCGUcuuUGGGCACCGGUgc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 120232 | 0.72 | 0.717694 |
Target: 5'- --cUACCgGCAGGAGCCgGcGGCCGCGc -3' miRNA: 3'- agaGUGG-CGUCUUUGGgCaCCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 217358 | 0.66 | 0.957052 |
Target: 5'- -aUCACCGUAGuagucCCCGUaccagauggcGGUCGCGu -3' miRNA: 3'- agAGUGGCGUCuuu--GGGCA----------CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 126275 | 0.76 | 0.494671 |
Target: 5'- aUCUCGCaaccgcgccaGCGGAAaucgaugguGCCCGUGGCgGCGg -3' miRNA: 3'- -AGAGUGg---------CGUCUU---------UGGGCACCGgUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 44562 | 0.75 | 0.522756 |
Target: 5'- aCUCACCGCGGguACCCGgaaCCACa -3' miRNA: 3'- aGAGUGGCGUCuuUGGGCaccGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 18654 | 0.75 | 0.561103 |
Target: 5'- ---gGCCGCAcGGACCUGcUGGCCACGg -3' miRNA: 3'- agagUGGCGUcUUUGGGC-ACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 1079 | 0.74 | 0.569845 |
Target: 5'- cUCUCGCCGCGc-GACCCcuggaucgugcugGUGGCCACc -3' miRNA: 3'- -AGAGUGGCGUcuUUGGG-------------CACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 97399 | 0.74 | 0.580573 |
Target: 5'- cCUCGCCGaAGGAGCCC-UGGCCcagGCGa -3' miRNA: 3'- aGAGUGGCgUCUUUGGGcACCGG---UGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 208402 | 0.73 | 0.669137 |
Target: 5'- ---aACCGuCAGGAGgCCGUGcGCCACGg -3' miRNA: 3'- agagUGGC-GUCUUUgGGCAC-CGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 77104 | 0.73 | 0.649463 |
Target: 5'- gCUCAUcccgaCGCAGGAuucgGCCuCGUGGCCGCc -3' miRNA: 3'- aGAGUG-----GCGUCUU----UGG-GCACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 32205 | 0.74 | 0.580573 |
Target: 5'- cCUCACCGCGGuGACUgGcuaUGGCCGCc -3' miRNA: 3'- aGAGUGGCGUCuUUGGgC---ACCGGUGc -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 110768 | 0.79 | 0.351211 |
Target: 5'- gCagGCCGCGGAGACgugCGUGGCCACGu -3' miRNA: 3'- aGagUGGCGUCUUUGg--GCACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 216353 | 0.73 | 0.649463 |
Target: 5'- --cCACCGaggguguGAGGCCCGUGGuCCGCGc -3' miRNA: 3'- agaGUGGCgu-----CUUUGGGCACC-GGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 152736 | 0.79 | 0.351211 |
Target: 5'- cUUCGCCG-AGugGCCCGUGGUCACGg -3' miRNA: 3'- aGAGUGGCgUCuuUGGGCACCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 128300 | 0.74 | 0.570818 |
Target: 5'- gCUCGCCGCGGAAAUCggUGUGGaaGCGg -3' miRNA: 3'- aGAGUGGCGUCUUUGG--GCACCggUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 187442 | 0.73 | 0.649463 |
Target: 5'- ---aGCUGCAGAAGCUgGUGcGCCGCGu -3' miRNA: 3'- agagUGGCGUCUUUGGgCAC-CGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 40542 | 0.72 | 0.705192 |
Target: 5'- --cCGCCGCGGAAACcgguuCCGUgacucaccgaucccGGCCACGg -3' miRNA: 3'- agaGUGGCGUCUUUG-----GGCA--------------CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 13891 | 0.76 | 0.494671 |
Target: 5'- aUUUCGCCG-GGggGCCCGgcgcggagggGGCCGCGg -3' miRNA: 3'- -AGAGUGGCgUCuuUGGGCa---------CCGGUGC- -5' |
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14606 | 3' | -56.5 | NC_003521.1 | + | 72680 | 0.75 | 0.551435 |
Target: 5'- --aCGCCGCAGG---CCGUGGCCACc -3' miRNA: 3'- agaGUGGCGUCUuugGGCACCGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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