miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 218313 1.1 0.003954
Target:  5'- cUCUCACCGCAGAAACCCGUGGCCACGg -3'
miRNA:   3'- -AGAGUGGCGUCUUUGGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 101934 0.81 0.263096
Target:  5'- aCUCGCCGguGggGuCCaCGUGGCCGCc -3'
miRNA:   3'- aGAGUGGCguCuuU-GG-GCACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 213739 0.81 0.281706
Target:  5'- --gCGCCGCAGAAGgCCGUGGUgGCGg -3'
miRNA:   3'- agaGUGGCGUCUUUgGGCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 110768 0.79 0.351211
Target:  5'- gCagGCCGCGGAGACgugCGUGGCCACGu -3'
miRNA:   3'- aGagUGGCGUCUUUGg--GCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 152736 0.79 0.351211
Target:  5'- cUUCGCCG-AGugGCCCGUGGUCACGg -3'
miRNA:   3'- aGAGUGGCgUCuuUGGGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 13891 0.76 0.494671
Target:  5'- aUUUCGCCG-GGggGCCCGgcgcggagggGGCCGCGg -3'
miRNA:   3'- -AGAGUGGCgUCuuUGGGCa---------CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 126275 0.76 0.494671
Target:  5'- aUCUCGCaaccgcgccaGCGGAAaucgaugguGCCCGUGGCgGCGg -3'
miRNA:   3'- -AGAGUGg---------CGUCUU---------UGGGCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 44562 0.75 0.522756
Target:  5'- aCUCACCGCGGguACCCGgaaCCACa -3'
miRNA:   3'- aGAGUGGCGUCuuUGGGCaccGGUGc -5'
14606 3' -56.5 NC_003521.1 + 83745 0.75 0.532256
Target:  5'- cCUCACCGCGGggGgCCugggacaggGUGGCgGCGc -3'
miRNA:   3'- aGAGUGGCGUCuuUgGG---------CACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 72680 0.75 0.551435
Target:  5'- --aCGCCGCAGG---CCGUGGCCACc -3'
miRNA:   3'- agaGUGGCGUCUuugGGCACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 153072 0.75 0.561103
Target:  5'- cCUcCGCCGCcGggGCCCG-GGCCGgGg -3'
miRNA:   3'- aGA-GUGGCGuCuuUGGGCaCCGGUgC- -5'
14606 3' -56.5 NC_003521.1 + 18654 0.75 0.561103
Target:  5'- ---gGCCGCAcGGACCUGcUGGCCACGg -3'
miRNA:   3'- agagUGGCGUcUUUGGGC-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 201307 0.74 0.569845
Target:  5'- cUCUCGCCGCGc-GACCCcuggaucgugcugGUGGCCACc -3'
miRNA:   3'- -AGAGUGGCGUcuUUGGG-------------CACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 1079 0.74 0.569845
Target:  5'- cUCUCGCCGCGc-GACCCcuggaucgugcugGUGGCCACc -3'
miRNA:   3'- -AGAGUGGCGUcuUUGGG-------------CACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 128300 0.74 0.570818
Target:  5'- gCUCGCCGCGGAAAUCggUGUGGaaGCGg -3'
miRNA:   3'- aGAGUGGCGUCUUUGG--GCACCggUGC- -5'
14606 3' -56.5 NC_003521.1 + 97399 0.74 0.580573
Target:  5'- cCUCGCCGaAGGAGCCC-UGGCCcagGCGa -3'
miRNA:   3'- aGAGUGGCgUCUUUGGGcACCGG---UGC- -5'
14606 3' -56.5 NC_003521.1 + 32205 0.74 0.580573
Target:  5'- cCUCACCGCGGuGACUgGcuaUGGCCGCc -3'
miRNA:   3'- aGAGUGGCGUCuUUGGgC---ACCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 73094 0.74 0.60313
Target:  5'- --cCACCGCAGcgccacgcaauccaCCGUGGCCACGg -3'
miRNA:   3'- agaGUGGCGUCuuug----------GGCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 72835 0.73 0.629738
Target:  5'- gCUCACCGCGacGGCCUGgGGCgGCGa -3'
miRNA:   3'- aGAGUGGCGUcuUUGGGCaCCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 129835 0.73 0.629738
Target:  5'- ---uGCUGCuGggGCCCGUGGCCGu- -3'
miRNA:   3'- agagUGGCGuCuuUGGGCACCGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.