miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 3' -56.5 NC_003521.1 + 86590 0.66 0.949379
Target:  5'- --aCGCCGCagccggggaAGAAgcGCUCGUGGUgGCGg -3'
miRNA:   3'- agaGUGGCG---------UCUU--UGGGCACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 151019 0.66 0.940845
Target:  5'- --aCACgGCgcaagucucgGGGAACCgCGUGGUCGCGu -3'
miRNA:   3'- agaGUGgCG----------UCUUUGG-GCACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 102501 0.66 0.949379
Target:  5'- gUCgcgcaGCCGCAGGu-CCaUGUcGGCCACGa -3'
miRNA:   3'- -AGag---UGGCGUCUuuGG-GCA-CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 74181 0.66 0.945221
Target:  5'- aCUgCGCCGCGGc-GCCCGgcgcgcGGCC-CGa -3'
miRNA:   3'- aGA-GUGGCGUCuuUGGGCa-----CCGGuGC- -5'
14606 3' -56.5 NC_003521.1 + 191070 0.66 0.945221
Target:  5'- gUUC-CCGCGGcGACCgugGUGGCgGCGg -3'
miRNA:   3'- aGAGuGGCGUCuUUGGg--CACCGgUGC- -5'
14606 3' -56.5 NC_003521.1 + 48671 0.66 0.940845
Target:  5'- --aCACCGCAGAccuaCGUGGauCCGCGg -3'
miRNA:   3'- agaGUGGCGUCUuuggGCACC--GGUGC- -5'
14606 3' -56.5 NC_003521.1 + 174504 0.66 0.953322
Target:  5'- ---gACUGCAG-GGCCgCGaUGGCCGCGc -3'
miRNA:   3'- agagUGGCGUCuUUGG-GC-ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 54533 0.66 0.949379
Target:  5'- --gCGCCGCuGggGCCCGgcGGCUuuuugACGu -3'
miRNA:   3'- agaGUGGCGuCuuUGGGCa-CCGG-----UGC- -5'
14606 3' -56.5 NC_003521.1 + 146418 0.66 0.953322
Target:  5'- --cCGCCGCGucAACCUGcgcGGCUACGa -3'
miRNA:   3'- agaGUGGCGUcuUUGGGCa--CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 125844 0.66 0.960574
Target:  5'- gCUCGCgGUGGucguacagcGCCUugGUGGCCGCGu -3'
miRNA:   3'- aGAGUGgCGUCuu-------UGGG--CACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 225977 0.66 0.940845
Target:  5'- -aUCACCGUAGAcACCUGUuaCCGCu -3'
miRNA:   3'- agAGUGGCGUCUuUGGGCAccGGUGc -5'
14606 3' -56.5 NC_003521.1 + 223324 0.66 0.953322
Target:  5'- gCUCgucgcgcuGCCGCAGAuagguGCCCcaGGCCuCGg -3'
miRNA:   3'- aGAG--------UGGCGUCUu----UGGGcaCCGGuGC- -5'
14606 3' -56.5 NC_003521.1 + 141127 0.66 0.960574
Target:  5'- cUUCugCGCccgcGAcACCUGUuucGGCCGCGa -3'
miRNA:   3'- aGAGugGCGu---CUuUGGGCA---CCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 138682 0.66 0.949379
Target:  5'- cCUCACCgGCGacAAGgCCGUGaGCCugGg -3'
miRNA:   3'- aGAGUGG-CGUc-UUUgGGCAC-CGGugC- -5'
14606 3' -56.5 NC_003521.1 + 32411 0.66 0.940845
Target:  5'- --aCACaGCA---GCCCGUGGCgCACGg -3'
miRNA:   3'- agaGUGgCGUcuuUGGGCACCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 90367 0.66 0.945221
Target:  5'- gCUCGCCGCcccagaccaggAGGAcCCCG-GGCgCGCu -3'
miRNA:   3'- aGAGUGGCG-----------UCUUuGGGCaCCG-GUGc -5'
14606 3' -56.5 NC_003521.1 + 217486 0.66 0.953322
Target:  5'- --aCACaGCAGGAacgugcaggugGCCUGcaUGGCCACGg -3'
miRNA:   3'- agaGUGgCGUCUU-----------UGGGC--ACCGGUGC- -5'
14606 3' -56.5 NC_003521.1 + 190327 0.66 0.940845
Target:  5'- aUCUCcaccGCCGCcGAcACgCUGUGGCaCGCGc -3'
miRNA:   3'- -AGAG----UGGCGuCUuUG-GGCACCG-GUGC- -5'
14606 3' -56.5 NC_003521.1 + 101987 0.66 0.940845
Target:  5'- aUCUgGCCGCAGG---CCGUaGCCGCc -3'
miRNA:   3'- -AGAgUGGCGUCUuugGGCAcCGGUGc -5'
14606 3' -56.5 NC_003521.1 + 217358 0.66 0.957052
Target:  5'- -aUCACCGUAGuagucCCCGUaccagauggcGGUCGCGu -3'
miRNA:   3'- agAGUGGCGUCuuu--GGGCA----------CCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.