Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 139794 | 0.67 | 0.870697 |
Target: 5'- -gCGUCGCCcucGGCGGuggcgaaGCCGCCGUcGAGc -3' miRNA: 3'- aaGUAGUGGu--CCGUC-------CGGUGGCA-CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 118227 | 0.67 | 0.849042 |
Target: 5'- -cCGUCGCCGGGguGGUCAaugccUCGUGu- -3' miRNA: 3'- aaGUAGUGGUCCguCCGGU-----GGCACuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 157272 | 0.67 | 0.841202 |
Target: 5'- -aCGUCaACCuGGUGGGCC-CCGUGuGc -3' miRNA: 3'- aaGUAG-UGGuCCGUCCGGuGGCACuC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 100065 | 0.67 | 0.841202 |
Target: 5'- gUCAUCGCCcggcacggAGGCGGGCgccucgacCGCCGacGAGg -3' miRNA: 3'- aAGUAGUGG--------UCCGUCCG--------GUGGCa-CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 76774 | 0.67 | 0.841202 |
Target: 5'- -cCGUCGCCGuGGCcgAGGCCACCa---- -3' miRNA: 3'- aaGUAGUGGU-CCG--UCCGGUGGcacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 13866 | 0.67 | 0.864154 |
Target: 5'- gUC-UCugCGGGCGGcGCCGCCaUGGa -3' miRNA: 3'- aAGuAGugGUCCGUC-CGGUGGcACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 124646 | 0.67 | 0.841202 |
Target: 5'- gUCgAUCACCGGGUcGGgCAgCGUGAa -3' miRNA: 3'- aAG-UAGUGGUCCGuCCgGUgGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 128246 | 0.67 | 0.833181 |
Target: 5'- gUCGcgguUCAgCAGGUAGGCCGUgGUGGGc -3' miRNA: 3'- aAGU----AGUgGUCCGUCCGGUGgCACUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 182044 | 0.67 | 0.864154 |
Target: 5'- gUCGUCGCCGGcGCGcGCCGCCcugcaGUGGc -3' miRNA: 3'- aAGUAGUGGUC-CGUcCGGUGG-----CACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 50607 | 0.67 | 0.864154 |
Target: 5'- -cCAUCugagUCAGGgAGGUC-CCGUGAGa -3' miRNA: 3'- aaGUAGu---GGUCCgUCCGGuGGCACUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 98428 | 0.67 | 0.864154 |
Target: 5'- gUgGUgGCgGGGCGGGCgUACgGUGAGa -3' miRNA: 3'- aAgUAgUGgUCCGUCCG-GUGgCACUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 83929 | 0.67 | 0.849042 |
Target: 5'- -cCGUCGCCccccgugccaucGGGCAgcGGCCGCCG-GAu -3' miRNA: 3'- aaGUAGUGG------------UCCGU--CCGGUGGCaCUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 126851 | 0.66 | 0.904564 |
Target: 5'- -gCAcCGCCAggaacagcucgcGGCAGGCCugCGUcaguGAGa -3' miRNA: 3'- aaGUaGUGGU------------CCGUCCGGugGCA----CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 125777 | 0.66 | 0.904564 |
Target: 5'- -aCGUCGCuCAGGCAgccGGCCugCGa--- -3' miRNA: 3'- aaGUAGUG-GUCCGU---CCGGugGCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 65492 | 0.66 | 0.904564 |
Target: 5'- --gGUgACCAGGCAGGCgACCu---- -3' miRNA: 3'- aagUAgUGGUCCGUCCGgUGGcacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 24480 | 0.66 | 0.904564 |
Target: 5'- cUCA-CACCcucGguGGCCACCGaGAGa -3' miRNA: 3'- aAGUaGUGGuc-CguCCGGUGGCaCUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 119893 | 0.66 | 0.902729 |
Target: 5'- cUCGUCGCCccgcGGGUGGGCCuggaacagguggauGCCGcUGAc -3' miRNA: 3'- aAGUAGUGG----UCCGUCCGG--------------UGGC-ACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 37465 | 0.66 | 0.898368 |
Target: 5'- ---cUCGCgc-GCGGGCCACCGUGGu -3' miRNA: 3'- aaguAGUGgucCGUCCGGUGGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 210903 | 0.66 | 0.891951 |
Target: 5'- -cCGUCGCCAGGCccuugacGGCCACgGg--- -3' miRNA: 3'- aaGUAGUGGUCCGu------CCGGUGgCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 202919 | 0.66 | 0.910538 |
Target: 5'- -aCAcCGCCGGGU--GCUACCGUGAu -3' miRNA: 3'- aaGUaGUGGUCCGucCGGUGGCACUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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