Results 21 - 40 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 227237 | 0.77 | 0.324079 |
Target: 5'- cUCGUCGCCAGGgGGGCCaaucggACCGUcgGAGa -3' miRNA: 3'- aAGUAGUGGUCCgUCCGG------UGGCA--CUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 170280 | 0.73 | 0.537923 |
Target: 5'- gUCGUCGCCuccgAGGUAGGCuUACCgGUGGGa -3' miRNA: 3'- aAGUAGUGG----UCCGUCCG-GUGG-CACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 134160 | 0.71 | 0.65674 |
Target: 5'- cUCGUCGCaCAGGUAGGUgGCCaUGAu -3' miRNA: 3'- aAGUAGUG-GUCCGUCCGgUGGcACUc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 225548 | 0.7 | 0.676617 |
Target: 5'- cUCGUCACCAGGCAGuGCagaCG-GGGa -3' miRNA: 3'- aAGUAGUGGUCCGUC-CGgugGCaCUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 189938 | 0.7 | 0.706152 |
Target: 5'- aUCAUCAUCGucGCGGGCCGCCGa--- -3' miRNA: 3'- aAGUAGUGGUc-CGUCCGGUGGCacuc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 223149 | 0.7 | 0.715888 |
Target: 5'- ---uUgGCCGGGUuacgcaGGGCCACCGUGGu -3' miRNA: 3'- aaguAgUGGUCCG------UCCGGUGGCACUc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 165685 | 0.69 | 0.77258 |
Target: 5'- -gCAUCcCCAGGUcGGCCGCCGa--- -3' miRNA: 3'- aaGUAGuGGUCCGuCCGGUGGCacuc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 186528 | 0.69 | 0.77258 |
Target: 5'- --uGUCGCCAGcGgGGGCU-CCGUGGGa -3' miRNA: 3'- aagUAGUGGUC-CgUCCGGuGGCACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 50607 | 0.67 | 0.864154 |
Target: 5'- -cCAUCugagUCAGGgAGGUC-CCGUGAGa -3' miRNA: 3'- aaGUAGu---GGUCCgUCCGGuGGCACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 118227 | 0.67 | 0.849042 |
Target: 5'- -cCGUCGCCGGGguGGUCAaugccUCGUGu- -3' miRNA: 3'- aaGUAGUGGUCCguCCGGU-----GGCACuc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 83929 | 0.67 | 0.849042 |
Target: 5'- -cCGUCGCCccccgugccaucGGGCAgcGGCCGCCG-GAu -3' miRNA: 3'- aaGUAGUGG------------UCCGU--CCGGUGGCaCUc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 124646 | 0.67 | 0.841202 |
Target: 5'- gUCgAUCACCGGGUcGGgCAgCGUGAa -3' miRNA: 3'- aAG-UAGUGGUCCGuCCgGUgGCACUc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 128246 | 0.67 | 0.833181 |
Target: 5'- gUCGcgguUCAgCAGGUAGGCCGUgGUGGGc -3' miRNA: 3'- aAGU----AGUgGUCCGUCCGGUGgCACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 77609 | 0.68 | 0.798555 |
Target: 5'- -aCGUCACCGGGCGcGCCcgugacggcgccgGCCGaGAGg -3' miRNA: 3'- aaGUAGUGGUCCGUcCGG-------------UGGCaCUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 176779 | 0.68 | 0.790614 |
Target: 5'- -gCGUacaGCCAGGCGGGCCauuuACCGUc-- -3' miRNA: 3'- aaGUAg--UGGUCCGUCCGG----UGGCAcuc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 202919 | 0.66 | 0.910538 |
Target: 5'- -aCAcCGCCGGGU--GCUACCGUGAu -3' miRNA: 3'- aaGUaGUGGUCCGucCGGUGGCACUc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 121092 | 0.72 | 0.567217 |
Target: 5'- gUUCAUCuuCCGGGCcgGGGCCAucCCGcUGAGg -3' miRNA: 3'- -AAGUAGu-GGUCCG--UCCGGU--GGC-ACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 13182 | 0.71 | 0.666692 |
Target: 5'- gUCcUgACCAGGCgugccgcucGGGCCGCCGUGu- -3' miRNA: 3'- aAGuAgUGGUCCG---------UCCGGUGGCACuc -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 4231 | 0.71 | 0.666692 |
Target: 5'- gUCGgaGCCccgAGGCuGGCUGCCGUGAGa -3' miRNA: 3'- aAGUagUGG---UCCGuCCGGUGGCACUC- -5' |
|||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 42413 | 0.7 | 0.676617 |
Target: 5'- -cCGUCACCAcaacGGaa-GCCACCGUGAGc -3' miRNA: 3'- aaGUAGUGGU----CCgucCGGUGGCACUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home