miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 67552 0.66 0.885317
Target:  5'- aUCAUgCGCCAacugugucaggcGGCGGGCC-CCGcGGGc -3'
miRNA:   3'- aAGUA-GUGGU------------CCGUCCGGuGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 124646 0.67 0.841202
Target:  5'- gUCgAUCACCGGGUcGGgCAgCGUGAa -3'
miRNA:   3'- aAG-UAGUGGUCCGuCCgGUgGCACUc -5'
14606 5' -57.7 NC_003521.1 + 83929 0.67 0.849042
Target:  5'- -cCGUCGCCccccgugccaucGGGCAgcGGCCGCCG-GAu -3'
miRNA:   3'- aaGUAGUGG------------UCCGU--CCGGUGGCaCUc -5'
14606 5' -57.7 NC_003521.1 + 118227 0.67 0.849042
Target:  5'- -cCGUCGCCGGGguGGUCAaugccUCGUGu- -3'
miRNA:   3'- aaGUAGUGGUCCguCCGGU-----GGCACuc -5'
14606 5' -57.7 NC_003521.1 + 50607 0.67 0.864154
Target:  5'- -cCAUCugagUCAGGgAGGUC-CCGUGAGa -3'
miRNA:   3'- aaGUAGu---GGUCCgUCCGGuGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 98428 0.67 0.864154
Target:  5'- gUgGUgGCgGGGCGGGCgUACgGUGAGa -3'
miRNA:   3'- aAgUAgUGgUCCGUCCG-GUGgCACUC- -5'
14606 5' -57.7 NC_003521.1 + 139794 0.67 0.870697
Target:  5'- -gCGUCGCCcucGGCGGuggcgaaGCCGCCGUcGAGc -3'
miRNA:   3'- aaGUAGUGGu--CCGUC-------CGGUGGCA-CUC- -5'
14606 5' -57.7 NC_003521.1 + 205131 0.66 0.87847
Target:  5'- cUCGUCgauggugaACCAGGgcCGGGUgGCCGUGGa -3'
miRNA:   3'- aAGUAG--------UGGUCC--GUCCGgUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 217198 0.66 0.885317
Target:  5'- -gCcgC-CCAGGCAGGCCACgGcGGu -3'
miRNA:   3'- aaGuaGuGGUCCGUCCGGUGgCaCUc -5'
14606 5' -57.7 NC_003521.1 + 128246 0.67 0.833181
Target:  5'- gUCGcgguUCAgCAGGUAGGCCGUgGUGGGc -3'
miRNA:   3'- aAGU----AGUgGUCCGUCCGGUGgCACUC- -5'
14606 5' -57.7 NC_003521.1 + 77609 0.68 0.798555
Target:  5'- -aCGUCACCGGGCGcGCCcgugacggcgccgGCCGaGAGg -3'
miRNA:   3'- aaGUAGUGGUCCGUcCGG-------------UGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 176779 0.68 0.790614
Target:  5'- -gCGUacaGCCAGGCGGGCCauuuACCGUc-- -3'
miRNA:   3'- aaGUAg--UGGUCCGUCCGG----UGGCAcuc -5'
14606 5' -57.7 NC_003521.1 + 227237 0.77 0.324079
Target:  5'- cUCGUCGCCAGGgGGGCCaaucggACCGUcgGAGa -3'
miRNA:   3'- aAGUAGUGGUCCgUCCGG------UGGCA--CUC- -5'
14606 5' -57.7 NC_003521.1 + 170280 0.73 0.537923
Target:  5'- gUCGUCGCCuccgAGGUAGGCuUACCgGUGGGa -3'
miRNA:   3'- aAGUAGUGG----UCCGUCCG-GUGG-CACUC- -5'
14606 5' -57.7 NC_003521.1 + 134160 0.71 0.65674
Target:  5'- cUCGUCGCaCAGGUAGGUgGCCaUGAu -3'
miRNA:   3'- aAGUAGUG-GUCCGUCCGgUGGcACUc -5'
14606 5' -57.7 NC_003521.1 + 225548 0.7 0.676617
Target:  5'- cUCGUCACCAGGCAGuGCagaCG-GGGa -3'
miRNA:   3'- aAGUAGUGGUCCGUC-CGgugGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 189938 0.7 0.706152
Target:  5'- aUCAUCAUCGucGCGGGCCGCCGa--- -3'
miRNA:   3'- aAGUAGUGGUc-CGUCCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 223149 0.7 0.715888
Target:  5'- ---uUgGCCGGGUuacgcaGGGCCACCGUGGu -3'
miRNA:   3'- aaguAgUGGUCCG------UCCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 165685 0.69 0.77258
Target:  5'- -gCAUCcCCAGGUcGGCCGCCGa--- -3'
miRNA:   3'- aaGUAGuGGUCCGuCCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 186528 0.69 0.77258
Target:  5'- --uGUCGCCAGcGgGGGCU-CCGUGGGa -3'
miRNA:   3'- aagUAGUGGUC-CgUCCGGuGGCACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.