miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 104025 0.77 0.316952
Target:  5'- gUCGUCGgCGGGCAGcGUgACCGUGAGc -3'
miRNA:   3'- aAGUAGUgGUCCGUC-CGgUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 12508 0.66 0.889323
Target:  5'- cUCAUgaaaaucUACCAGGCcGGCCggcguuuccacuucGCCGUGGa -3'
miRNA:   3'- aAGUA-------GUGGUCCGuCCGG--------------UGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 99448 0.66 0.904564
Target:  5'- gUCGUCAUCGGGCAccGcGUCACCGa--- -3'
miRNA:   3'- aAGUAGUGGUCCGU--C-CGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 202919 0.66 0.910538
Target:  5'- -aCAcCGCCGGGU--GCUACCGUGAu -3'
miRNA:   3'- aaGUaGUGGUCCGucCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 42413 0.7 0.676617
Target:  5'- -cCGUCACCAcaacGGaa-GCCACCGUGAGc -3'
miRNA:   3'- aaGUAGUGGU----CCgucCGGUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 143208 0.68 0.781661
Target:  5'- aUUCAUgGCCAGGcCGGaGCCgucGCCGUGu- -3'
miRNA:   3'- -AAGUAgUGGUCC-GUC-CGG---UGGCACuc -5'
14606 5' -57.7 NC_003521.1 + 60168 0.68 0.816625
Target:  5'- gUCGUCGCCccGGUAGcgaGCCGCggCGUGAGa -3'
miRNA:   3'- aAGUAGUGGu-CCGUC---CGGUG--GCACUC- -5'
14606 5' -57.7 NC_003521.1 + 223314 0.68 0.816625
Target:  5'- -gCGcCGCCGGGcCGGGaaCCGCCGUGAc -3'
miRNA:   3'- aaGUaGUGGUCC-GUCC--GGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 76774 0.67 0.841202
Target:  5'- -cCGUCGCCGuGGCcgAGGCCACCa---- -3'
miRNA:   3'- aaGUAGUGGU-CCG--UCCGGUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 106109 0.66 0.885317
Target:  5'- cUCGg-GCaCGGGCGuGGCgGCCGUGGGc -3'
miRNA:   3'- aAGUagUG-GUCCGU-CCGgUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 182044 0.67 0.864154
Target:  5'- gUCGUCGCCGGcGCGcGCCGCCcugcaGUGGc -3'
miRNA:   3'- aAGUAGUGGUC-CGUcCGGUGG-----CACUc -5'
14606 5' -57.7 NC_003521.1 + 100065 0.67 0.841202
Target:  5'- gUCAUCGCCcggcacggAGGCGGGCgccucgacCGCCGacGAGg -3'
miRNA:   3'- aAGUAGUGG--------UCCGUCCG--------GUGGCa-CUC- -5'
14606 5' -57.7 NC_003521.1 + 121092 0.72 0.567217
Target:  5'- gUUCAUCuuCCGGGCcgGGGCCAucCCGcUGAGg -3'
miRNA:   3'- -AAGUAGu-GGUCCG--UCCGGU--GGC-ACUC- -5'
14606 5' -57.7 NC_003521.1 + 17187 0.66 0.87847
Target:  5'- -----aGCUGGGCAGGCgCAUCGUGGa -3'
miRNA:   3'- aaguagUGGUCCGUCCG-GUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 13182 0.71 0.666692
Target:  5'- gUCcUgACCAGGCgugccgcucGGGCCGCCGUGu- -3'
miRNA:   3'- aAGuAgUGGUCCG---------UCCGGUGGCACuc -5'
14606 5' -57.7 NC_003521.1 + 157272 0.67 0.841202
Target:  5'- -aCGUCaACCuGGUGGGCC-CCGUGuGc -3'
miRNA:   3'- aaGUAG-UGGuCCGUCCGGuGGCACuC- -5'
14606 5' -57.7 NC_003521.1 + 177775 0.66 0.885317
Target:  5'- gUCGUCGCCAgGGCcgacgGGGCCuguCCGcUGGu -3'
miRNA:   3'- aAGUAGUGGU-CCG-----UCCGGu--GGC-ACUc -5'
14606 5' -57.7 NC_003521.1 + 92368 0.66 0.891951
Target:  5'- uUUCGUCAUCAGcacGCAccGGCCACCccugGAGc -3'
miRNA:   3'- -AAGUAGUGGUC---CGU--CCGGUGGca--CUC- -5'
14606 5' -57.7 NC_003521.1 + 4231 0.71 0.666692
Target:  5'- gUCGgaGCCccgAGGCuGGCUGCCGUGAGa -3'
miRNA:   3'- aAGUagUGG---UCCGuCCGGUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 37856 0.68 0.790614
Target:  5'- -gCGUUACaCAGGCuGGCCugCGgacUGAGc -3'
miRNA:   3'- aaGUAGUG-GUCCGuCCGGugGC---ACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.