miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 4231 0.71 0.666692
Target:  5'- gUCGgaGCCccgAGGCuGGCUGCCGUGAGa -3'
miRNA:   3'- aAGUagUGG---UCCGuCCGGUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 12508 0.66 0.889323
Target:  5'- cUCAUgaaaaucUACCAGGCcGGCCggcguuuccacuucGCCGUGGa -3'
miRNA:   3'- aAGUA-------GUGGUCCGuCCGG--------------UGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 13182 0.71 0.666692
Target:  5'- gUCcUgACCAGGCgugccgcucGGGCCGCCGUGu- -3'
miRNA:   3'- aAGuAgUGGUCCG---------UCCGGUGGCACuc -5'
14606 5' -57.7 NC_003521.1 + 13866 0.67 0.864154
Target:  5'- gUC-UCugCGGGCGGcGCCGCCaUGGa -3'
miRNA:   3'- aAGuAGugGUCCGUC-CGGUGGcACUc -5'
14606 5' -57.7 NC_003521.1 + 16929 0.66 0.891951
Target:  5'- aUCAUCACCAGGaacgaccGCCguuACCGUcGGGg -3'
miRNA:   3'- aAGUAGUGGUCCguc----CGG---UGGCA-CUC- -5'
14606 5' -57.7 NC_003521.1 + 17187 0.66 0.87847
Target:  5'- -----aGCUGGGCAGGCgCAUCGUGGa -3'
miRNA:   3'- aaguagUGGUCCGUCCG-GUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 23325 0.66 0.910538
Target:  5'- -cCGUgGCCAuGCAGGCCACCu---- -3'
miRNA:   3'- aaGUAgUGGUcCGUCCGGUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 24480 0.66 0.904564
Target:  5'- cUCA-CACCcucGguGGCCACCGaGAGa -3'
miRNA:   3'- aAGUaGUGGuc-CguCCGGUGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 37465 0.66 0.898368
Target:  5'- ---cUCGCgc-GCGGGCCACCGUGGu -3'
miRNA:   3'- aaguAGUGgucCGUCCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 37856 0.68 0.790614
Target:  5'- -gCGUUACaCAGGCuGGCCugCGgacUGAGc -3'
miRNA:   3'- aaGUAGUG-GUCCGuCCGGugGC---ACUC- -5'
14606 5' -57.7 NC_003521.1 + 42413 0.7 0.676617
Target:  5'- -cCGUCACCAcaacGGaa-GCCACCGUGAGc -3'
miRNA:   3'- aaGUAGUGGU----CCgucCGGUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 50607 0.67 0.864154
Target:  5'- -cCAUCugagUCAGGgAGGUC-CCGUGAGa -3'
miRNA:   3'- aaGUAGu---GGUCCgUCCGGuGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 60168 0.68 0.816625
Target:  5'- gUCGUCGCCccGGUAGcgaGCCGCggCGUGAGa -3'
miRNA:   3'- aAGUAGUGGu-CCGUC---CGGUG--GCACUC- -5'
14606 5' -57.7 NC_003521.1 + 61770 0.66 0.904564
Target:  5'- -cCGUCACCGGGaccGCCGCCGg--- -3'
miRNA:   3'- aaGUAGUGGUCCgucCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 65492 0.66 0.904564
Target:  5'- --gGUgACCAGGCAGGCgACCu---- -3'
miRNA:   3'- aagUAgUGGUCCGUCCGgUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 67552 0.66 0.885317
Target:  5'- aUCAUgCGCCAacugugucaggcGGCGGGCC-CCGcGGGc -3'
miRNA:   3'- aAGUA-GUGGU------------CCGUCCGGuGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 76175 0.66 0.904564
Target:  5'- gUCGUC-----GCGGGCCugCGUGAGg -3'
miRNA:   3'- aAGUAGuggucCGUCCGGugGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 76774 0.67 0.841202
Target:  5'- -cCGUCGCCGuGGCcgAGGCCACCa---- -3'
miRNA:   3'- aaGUAGUGGU-CCG--UCCGGUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 77609 0.68 0.798555
Target:  5'- -aCGUCACCGGGCGcGCCcgugacggcgccgGCCGaGAGg -3'
miRNA:   3'- aaGUAGUGGUCCGUcCGG-------------UGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 83929 0.67 0.849042
Target:  5'- -cCGUCGCCccccgugccaucGGGCAgcGGCCGCCG-GAu -3'
miRNA:   3'- aaGUAGUGG------------UCCGU--CCGGUGGCaCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.