miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 227237 0.77 0.324079
Target:  5'- cUCGUCGCCAGGgGGGCCaaucggACCGUcgGAGa -3'
miRNA:   3'- aAGUAGUGGUCCgUCCGG------UGGCA--CUC- -5'
14606 5' -57.7 NC_003521.1 + 225548 0.7 0.676617
Target:  5'- cUCGUCACCAGGCAGuGCagaCG-GGGa -3'
miRNA:   3'- aAGUAGUGGUCCGUC-CGgugGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 223314 0.68 0.816625
Target:  5'- -gCGcCGCCGGGcCGGGaaCCGCCGUGAc -3'
miRNA:   3'- aaGUaGUGGUCC-GUCC--GGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 223149 0.7 0.715888
Target:  5'- ---uUgGCCGGGUuacgcaGGGCCACCGUGGu -3'
miRNA:   3'- aaguAgUGGUCCG------UCCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 218351 1.05 0.004811
Target:  5'- gUUCAUCACCAGGCAGGCCACCGUGAGc -3'
miRNA:   3'- -AAGUAGUGGUCCGUCCGGUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 217198 0.66 0.885317
Target:  5'- -gCcgC-CCAGGCAGGCCACgGcGGu -3'
miRNA:   3'- aaGuaGuGGUCCGUCCGGUGgCaCUc -5'
14606 5' -57.7 NC_003521.1 + 212465 0.66 0.910538
Target:  5'- -cCAUCaACCAGGcCAGGC--CCGUGGc -3'
miRNA:   3'- aaGUAG-UGGUCC-GUCCGguGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 210903 0.66 0.891951
Target:  5'- -cCGUCGCCAGGCccuugacGGCCACgGg--- -3'
miRNA:   3'- aaGUAGUGGUCCGu------CCGGUGgCacuc -5'
14606 5' -57.7 NC_003521.1 + 205131 0.66 0.87847
Target:  5'- cUCGUCgauggugaACCAGGgcCGGGUgGCCGUGGa -3'
miRNA:   3'- aAGUAG--------UGGUCC--GUCCGgUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 202919 0.66 0.910538
Target:  5'- -aCAcCGCCGGGU--GCUACCGUGAu -3'
miRNA:   3'- aaGUaGUGGUCCGucCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 189938 0.7 0.706152
Target:  5'- aUCAUCAUCGucGCGGGCCGCCGa--- -3'
miRNA:   3'- aAGUAGUGGUc-CGUCCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 186528 0.69 0.77258
Target:  5'- --uGUCGCCAGcGgGGGCU-CCGUGGGa -3'
miRNA:   3'- aagUAGUGGUC-CgUCCGGuGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 182044 0.67 0.864154
Target:  5'- gUCGUCGCCGGcGCGcGCCGCCcugcaGUGGc -3'
miRNA:   3'- aAGUAGUGGUC-CGUcCGGUGG-----CACUc -5'
14606 5' -57.7 NC_003521.1 + 177775 0.66 0.885317
Target:  5'- gUCGUCGCCAgGGCcgacgGGGCCuguCCGcUGGu -3'
miRNA:   3'- aAGUAGUGGU-CCG-----UCCGGu--GGC-ACUc -5'
14606 5' -57.7 NC_003521.1 + 176779 0.68 0.790614
Target:  5'- -gCGUacaGCCAGGCGGGCCauuuACCGUc-- -3'
miRNA:   3'- aaGUAg--UGGUCCGUCCGG----UGGCAcuc -5'
14606 5' -57.7 NC_003521.1 + 170280 0.73 0.537923
Target:  5'- gUCGUCGCCuccgAGGUAGGCuUACCgGUGGGa -3'
miRNA:   3'- aAGUAGUGG----UCCGUCCG-GUGG-CACUC- -5'
14606 5' -57.7 NC_003521.1 + 169468 0.66 0.910538
Target:  5'- gUUCGUCGCCAGGCGcGUCGUCGUuGGc -3'
miRNA:   3'- -AAGUAGUGGUCCGUcCGGUGGCAcUC- -5'
14606 5' -57.7 NC_003521.1 + 165685 0.69 0.77258
Target:  5'- -gCAUCcCCAGGUcGGCCGCCGa--- -3'
miRNA:   3'- aaGUAGuGGUCCGuCCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 157272 0.67 0.841202
Target:  5'- -aCGUCaACCuGGUGGGCC-CCGUGuGc -3'
miRNA:   3'- aaGUAG-UGGuCCGUCCGGuGGCACuC- -5'
14606 5' -57.7 NC_003521.1 + 149785 0.66 0.904564
Target:  5'- cUCAaCGCCAcGGCGuuccgcgaacGGCCGgCCGUGAc -3'
miRNA:   3'- aAGUaGUGGU-CCGU----------CCGGU-GGCACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.