miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 12508 0.66 0.889323
Target:  5'- cUCAUgaaaaucUACCAGGCcGGCCggcguuuccacuucGCCGUGGa -3'
miRNA:   3'- aAGUA-------GUGGUCCGuCCGG--------------UGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 67552 0.66 0.885317
Target:  5'- aUCAUgCGCCAacugugucaggcGGCGGGCC-CCGcGGGc -3'
miRNA:   3'- aAGUA-GUGGU------------CCGUCCGGuGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 106109 0.66 0.885317
Target:  5'- cUCGg-GCaCGGGCGuGGCgGCCGUGGGc -3'
miRNA:   3'- aAGUagUG-GUCCGU-CCGgUGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 217198 0.66 0.885317
Target:  5'- -gCcgC-CCAGGCAGGCCACgGcGGu -3'
miRNA:   3'- aaGuaGuGGUCCGUCCGGUGgCaCUc -5'
14606 5' -57.7 NC_003521.1 + 177775 0.66 0.885317
Target:  5'- gUCGUCGCCAgGGCcgacgGGGCCuguCCGcUGGu -3'
miRNA:   3'- aAGUAGUGGU-CCG-----UCCGGu--GGC-ACUc -5'
14606 5' -57.7 NC_003521.1 + 205131 0.66 0.87847
Target:  5'- cUCGUCgauggugaACCAGGgcCGGGUgGCCGUGGa -3'
miRNA:   3'- aAGUAG--------UGGUCC--GUCCGgUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 17187 0.66 0.87847
Target:  5'- -----aGCUGGGCAGGCgCAUCGUGGa -3'
miRNA:   3'- aaguagUGGUCCGUCCG-GUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 139794 0.67 0.870697
Target:  5'- -gCGUCGCCcucGGCGGuggcgaaGCCGCCGUcGAGc -3'
miRNA:   3'- aaGUAGUGGu--CCGUC-------CGGUGGCA-CUC- -5'
14606 5' -57.7 NC_003521.1 + 182044 0.67 0.864154
Target:  5'- gUCGUCGCCGGcGCGcGCCGCCcugcaGUGGc -3'
miRNA:   3'- aAGUAGUGGUC-CGUcCGGUGG-----CACUc -5'
14606 5' -57.7 NC_003521.1 + 50607 0.67 0.864154
Target:  5'- -cCAUCugagUCAGGgAGGUC-CCGUGAGa -3'
miRNA:   3'- aaGUAGu---GGUCCgUCCGGuGGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 13866 0.67 0.864154
Target:  5'- gUC-UCugCGGGCGGcGCCGCCaUGGa -3'
miRNA:   3'- aAGuAGugGUCCGUC-CGGUGGcACUc -5'
14606 5' -57.7 NC_003521.1 + 98428 0.67 0.864154
Target:  5'- gUgGUgGCgGGGCGGGCgUACgGUGAGa -3'
miRNA:   3'- aAgUAgUGgUCCGUCCG-GUGgCACUC- -5'
14606 5' -57.7 NC_003521.1 + 83929 0.67 0.849042
Target:  5'- -cCGUCGCCccccgugccaucGGGCAgcGGCCGCCG-GAu -3'
miRNA:   3'- aaGUAGUGG------------UCCGU--CCGGUGGCaCUc -5'
14606 5' -57.7 NC_003521.1 + 118227 0.67 0.849042
Target:  5'- -cCGUCGCCGGGguGGUCAaugccUCGUGu- -3'
miRNA:   3'- aaGUAGUGGUCCguCCGGU-----GGCACuc -5'
14606 5' -57.7 NC_003521.1 + 76774 0.67 0.841202
Target:  5'- -cCGUCGCCGuGGCcgAGGCCACCa---- -3'
miRNA:   3'- aaGUAGUGGU-CCG--UCCGGUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 157272 0.67 0.841202
Target:  5'- -aCGUCaACCuGGUGGGCC-CCGUGuGc -3'
miRNA:   3'- aaGUAG-UGGuCCGUCCGGuGGCACuC- -5'
14606 5' -57.7 NC_003521.1 + 100065 0.67 0.841202
Target:  5'- gUCAUCGCCcggcacggAGGCGGGCgccucgacCGCCGacGAGg -3'
miRNA:   3'- aAGUAGUGG--------UCCGUCCG--------GUGGCa-CUC- -5'
14606 5' -57.7 NC_003521.1 + 124646 0.67 0.841202
Target:  5'- gUCgAUCACCGGGUcGGgCAgCGUGAa -3'
miRNA:   3'- aAG-UAGUGGUCCGuCCgGUgGCACUc -5'
14606 5' -57.7 NC_003521.1 + 128246 0.67 0.833181
Target:  5'- gUCGcgguUCAgCAGGUAGGCCGUgGUGGGc -3'
miRNA:   3'- aAGU----AGUgGUCCGUCCGGUGgCACUC- -5'
14606 5' -57.7 NC_003521.1 + 223314 0.68 0.816625
Target:  5'- -gCGcCGCCGGGcCGGGaaCCGCCGUGAc -3'
miRNA:   3'- aaGUaGUGGUCC-GUCC--GGUGGCACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.