miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 218839 1.1 0.008867
Target:  5'- uUGACGUCAUGUCAGCGGCGAAACCGAa -3'
miRNA:   3'- -ACUGCAGUACAGUCGCCGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 98920 0.7 0.946822
Target:  5'- gGGCGagUUGUGUCGGaucGCGGGACCGAg -3'
miRNA:   3'- aCUGC--AGUACAGUCgc-CGCUUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 130128 0.7 0.946822
Target:  5'- -uGCGUC--GUCGGCGGCGccGCCGc -3'
miRNA:   3'- acUGCAGuaCAGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 101482 0.68 0.978972
Target:  5'- gUGGCG-CGUGaggugcucgagCAGCGGCGGccagacgcGGCCGAc -3'
miRNA:   3'- -ACUGCaGUACa----------GUCGCCGCU--------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 45541 0.68 0.978972
Target:  5'- gGGCGcCccGUCAGCGGCGG---CGAa -3'
miRNA:   3'- aCUGCaGuaCAGUCGCCGCUuugGCU- -5'
14607 3' -52.8 NC_003521.1 + 203313 0.68 0.976652
Target:  5'- gGACGUCGcugaUGUCcGCGGgccCGAAaacGCCGGg -3'
miRNA:   3'- aCUGCAGU----ACAGuCGCC---GCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 145855 0.68 0.976652
Target:  5'- -cGCGUCucUGggccCGGCGGCGGGcggcGCCGAc -3'
miRNA:   3'- acUGCAGu-ACa---GUCGCCGCUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 73139 0.68 0.976652
Target:  5'- cGGCGggggCAg--CGGCGGCGgcGCCGc -3'
miRNA:   3'- aCUGCa---GUacaGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 209729 0.68 0.971457
Target:  5'- gGAgGUCGUGcgCAGCGGCagccacGGcAGCCGGa -3'
miRNA:   3'- aCUgCAGUACa-GUCGCCG------CU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 72390 0.68 0.971177
Target:  5'- cGGCGUCcucGUCgaucaccAGCGGCGGAggcACUGAg -3'
miRNA:   3'- aCUGCAGua-CAG-------UCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 202054 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 233618 0.69 0.96827
Target:  5'- cGGCGggGUGcucgagggcaauuUCAGCGGCGgcGCCGu -3'
miRNA:   3'- aCUGCagUAC-------------AGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 88104 0.69 0.958672
Target:  5'- cGGCGaaguUCAUggaGUCGGCGGCcucguAAGCCGAa -3'
miRNA:   3'- aCUGC----AGUA---CAGUCGCCGc----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 76695 0.69 0.954945
Target:  5'- cGACGggucCGUG-UAGCGGUGgcACCGGc -3'
miRNA:   3'- aCUGCa---GUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 70349 0.69 0.954945
Target:  5'- gGGCGUUgagcuUGUCGGCGGgGuaGAGCCGc -3'
miRNA:   3'- aCUGCAGu----ACAGUCGCCgC--UUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 198384 0.75 0.771508
Target:  5'- cGGCGUUGUGgcgGGCGGCGAcuCCGGc -3'
miRNA:   3'- aCUGCAGUACag-UCGCCGCUuuGGCU- -5'
14607 3' -52.8 NC_003521.1 + 95813 0.75 0.752742
Target:  5'- -cGCGUCGgcgaUGUCGGCGcGCGAGGCCu- -3'
miRNA:   3'- acUGCAGU----ACAGUCGC-CGCUUUGGcu -5'
14607 3' -52.8 NC_003521.1 + 13450 0.75 0.752742
Target:  5'- gGACGUCAaGcgCAGCGGCGGuagcGCCGu -3'
miRNA:   3'- aCUGCAGUaCa-GUCGCCGCUu---UGGCu -5'
14607 3' -52.8 NC_003521.1 + 34965 0.75 0.733561
Target:  5'- aGACGUCuuauUGUcCAGCGGCuggggcGAGCCGAa -3'
miRNA:   3'- aCUGCAGu---ACA-GUCGCCGc-----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 132433 0.66 0.995347
Target:  5'- cGGgGUCggGUUAGCGuGCGgcGCCu- -3'
miRNA:   3'- aCUgCAGuaCAGUCGC-CGCuuUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.