miRNA display CGI


Results 41 - 60 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 2112 0.66 0.809775
Target:  5'- uGCCgGUGCUaccuccucuggucaaCGuCCCACggccgccgaccuGCUCCAGCa -3'
miRNA:   3'- gCGG-CGCGA---------------GC-GGGUGau----------CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 125429 0.66 0.809775
Target:  5'- gGCCGUgGCggcCGCCCGCgcccuGCacaugCCGGCc -3'
miRNA:   3'- gCGGCG-CGa--GCGGGUGau---CGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 18927 0.66 0.809775
Target:  5'- gCGCCGCGCgccggcaaucCGCCCcACacGCccuacCCAGCg -3'
miRNA:   3'- -GCGGCGCGa---------GCGGG-UGauCGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 36452 0.66 0.809775
Target:  5'- aGuuGCGCUCGCUC-CUGGg-CC-GCg -3'
miRNA:   3'- gCggCGCGAGCGGGuGAUCgaGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 31054 0.66 0.809775
Target:  5'- -aCCGgaGCUCGCuCCACUgccAGCcgguacUCCGGCu -3'
miRNA:   3'- gcGGCg-CGAGCG-GGUGA---UCG------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 77587 0.66 0.809775
Target:  5'- aCGCUGaUGUUCGUCCGCgAGUcCCAGg -3'
miRNA:   3'- -GCGGC-GCGAGCGGGUGaUCGaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 121012 0.66 0.809775
Target:  5'- gGCgUGCGCaccaccgugUCGcCCCGCUGGCgCCGGa -3'
miRNA:   3'- gCG-GCGCG---------AGC-GGGUGAUCGaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 6745 0.66 0.809775
Target:  5'- aGCCaGCGCUCGCCgAgUcccagGGCgUCCauGGCc -3'
miRNA:   3'- gCGG-CGCGAGCGGgUgA-----UCG-AGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 206885 0.66 0.809775
Target:  5'- uCGCCGCGCaCGCCgCAC-AGC---AGCa -3'
miRNA:   3'- -GCGGCGCGaGCGG-GUGaUCGaggUCG- -5'
14607 5' -60.9 NC_003521.1 + 219432 0.66 0.809775
Target:  5'- gGCCguaucccaGCGCUCGCacaGCUcggucAGCUgCGGCa -3'
miRNA:   3'- gCGG--------CGCGAGCGgg-UGA-----UCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 202340 0.66 0.809775
Target:  5'- uGCCgGUGCUaccuccucuggucaaCGuCCCACggccgccgaccuGCUCCAGCa -3'
miRNA:   3'- gCGG-CGCGA---------------GC-GGGUGau----------CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 165660 0.66 0.809775
Target:  5'- aCGCCGCGCg-GCaCCAU--GCgUCCAGg -3'
miRNA:   3'- -GCGGCGCGagCG-GGUGauCG-AGGUCg -5'
14607 5' -60.9 NC_003521.1 + 42945 0.66 0.809775
Target:  5'- -uCCGCuGC-CGCCUGC-AGC-CCAGCg -3'
miRNA:   3'- gcGGCG-CGaGCGGGUGaUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 148855 0.66 0.809775
Target:  5'- uGCCGUGCaccgCGCCaGCUAcg-CCAGCc -3'
miRNA:   3'- gCGGCGCGa---GCGGgUGAUcgaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 77143 0.66 0.809775
Target:  5'- gCGCUGCGa--GaCCCACUuguugagcAGCUCCgacAGCa -3'
miRNA:   3'- -GCGGCGCgagC-GGGUGA--------UCGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 221953 0.66 0.809775
Target:  5'- uCGUCGCuGCUCaGCUgaCACgacAGCUCCAcGCc -3'
miRNA:   3'- -GCGGCG-CGAG-CGG--GUGa--UCGAGGU-CG- -5'
14607 5' -60.9 NC_003521.1 + 95110 0.66 0.808119
Target:  5'- gGCCGCGCgCGCUUgaGCguggccuugaagAGCUCC-GCg -3'
miRNA:   3'- gCGGCGCGaGCGGG--UGa-----------UCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 28504 0.66 0.801437
Target:  5'- cCGUCGgGCUCGUCUACgccCUUCAGg -3'
miRNA:   3'- -GCGGCgCGAGCGGGUGaucGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 122547 0.66 0.801437
Target:  5'- uGCUGCuGCUacCG-CCGCUGGUgCCGGCu -3'
miRNA:   3'- gCGGCG-CGA--GCgGGUGAUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 86420 0.66 0.801437
Target:  5'- aCGCgCGUGCcCGCCUccugAUUGGCggCAGCg -3'
miRNA:   3'- -GCG-GCGCGaGCGGG----UGAUCGagGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.