miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 233405 0.66 0.826016
Target:  5'- uGCCGUcucgGCUCcuggcCCCGgUGGCUCCgacGGCc -3'
miRNA:   3'- gCGGCG----CGAGc----GGGUgAUCGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 153668 0.66 0.822817
Target:  5'- gGCCGCGCgcacgaacugCGCCCGCccaacaccucgcGCUCCuugggacGCg -3'
miRNA:   3'- gCGGCGCGa---------GCGGGUGau----------CGAGGu------CG- -5'
14607 5' -60.9 NC_003521.1 + 123400 0.66 0.822817
Target:  5'- gGCCGCGCggacccgagaugcCGCCCuccACccGGUgCCAGCa -3'
miRNA:   3'- gCGGCGCGa------------GCGGG---UGa-UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 195944 0.66 0.817971
Target:  5'- aGCCGUcCUgCGUgggCCACaGGCUCUGGCa -3'
miRNA:   3'- gCGGCGcGA-GCG---GGUGaUCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 30963 0.66 0.817971
Target:  5'- aGCCagGCGCUCGgCaCGC-AGCagCAGCu -3'
miRNA:   3'- gCGG--CGCGAGCgG-GUGaUCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 45642 0.66 0.817971
Target:  5'- cCGCCGC-Cg-GCuCCGCgGGgUCCGGCg -3'
miRNA:   3'- -GCGGCGcGagCG-GGUGaUCgAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 194552 0.66 0.817971
Target:  5'- uGCCGCGUcgggCGCCUcgucgaaaUAGCUUgGGCc -3'
miRNA:   3'- gCGGCGCGa---GCGGGug------AUCGAGgUCG- -5'
14607 5' -60.9 NC_003521.1 + 135371 0.66 0.817971
Target:  5'- cCGCgGCGguuaUCGCCCGCgGGCgCCAa- -3'
miRNA:   3'- -GCGgCGCg---AGCGGGUGaUCGaGGUcg -5'
14607 5' -60.9 NC_003521.1 + 115103 0.66 0.817971
Target:  5'- gCGCCGuCGC-CGCCCcCgucGUgaccgCCGGCg -3'
miRNA:   3'- -GCGGC-GCGaGCGGGuGau-CGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 56905 0.66 0.817971
Target:  5'- gGCCGuCGCgacaGCgCCGC-AGCaccgccUCCAGCa -3'
miRNA:   3'- gCGGC-GCGag--CG-GGUGaUCG------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 107061 0.66 0.817971
Target:  5'- cCGCCGCGUccccggaaUCGCCgGgcCU-GCcggCCAGCa -3'
miRNA:   3'- -GCGGCGCG--------AGCGGgU--GAuCGa--GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 44424 0.66 0.817971
Target:  5'- uGCCGCuGCcCGCCCAUcgugacGGCggcUCGGCg -3'
miRNA:   3'- gCGGCG-CGaGCGGGUGa-----UCGa--GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 128024 0.66 0.817971
Target:  5'- gGCCgucccagaGCGCgUGCCCGuaGGCggCCAGCa -3'
miRNA:   3'- gCGG--------CGCGaGCGGGUgaUCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 56713 0.66 0.817971
Target:  5'- gGCCGCGCauuauuacUCGUUCAUcAGCggUCCgAGCg -3'
miRNA:   3'- gCGGCGCG--------AGCGGGUGaUCG--AGG-UCG- -5'
14607 5' -60.9 NC_003521.1 + 119203 0.66 0.817971
Target:  5'- aCGUgGCGCUgCGCCaGgUGGUgagcgCCAGCc -3'
miRNA:   3'- -GCGgCGCGA-GCGGgUgAUCGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 97347 0.66 0.817971
Target:  5'- uCGCUGUGCUUGCgCGCgauCUUgAGCa -3'
miRNA:   3'- -GCGGCGCGAGCGgGUGaucGAGgUCG- -5'
14607 5' -60.9 NC_003521.1 + 150748 0.66 0.817971
Target:  5'- cCGCgCGCGUgcgCGCCCGCccGCgUguGCg -3'
miRNA:   3'- -GCG-GCGCGa--GCGGGUGauCGaGguCG- -5'
14607 5' -60.9 NC_003521.1 + 99008 0.66 0.817158
Target:  5'- -aCCGCGgUCGUCUugUagacgauggcgccGGCUCCGGg -3'
miRNA:   3'- gcGGCGCgAGCGGGugA-------------UCGAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 179236 0.66 0.810601
Target:  5'- cCGCCGCGg--GCCUuCUGGCgccugaacucgccggCCAGCa -3'
miRNA:   3'- -GCGGCGCgagCGGGuGAUCGa--------------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 202340 0.66 0.809775
Target:  5'- uGCCgGUGCUaccuccucuggucaaCGuCCCACggccgccgaccuGCUCCAGCa -3'
miRNA:   3'- gCGG-CGCGA---------------GC-GGGUGau----------CGAGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.