miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 124476 0.75 0.331268
Target:  5'- cCGCCGCGCUCGCgguccguCCGCgucagcAGCUCuUGGCa -3'
miRNA:   3'- -GCGGCGCGAGCG-------GGUGa-----UCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 92402 0.75 0.331974
Target:  5'- cCGCCgGCGCggcCGCCCGCaccaUGGCUCCcucGCa -3'
miRNA:   3'- -GCGG-CGCGa--GCGGGUG----AUCGAGGu--CG- -5'
14607 5' -60.9 NC_003521.1 + 20398 0.75 0.338371
Target:  5'- aCGCCGUGCUCGUCUuucaGCUGGCcuucaccUUCGGCc -3'
miRNA:   3'- -GCGGCGCGAGCGGG----UGAUCG-------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 138011 0.74 0.361086
Target:  5'- gCGCCGCuacuuGCUgcCGCCCgaGCUGGCggccgCCGGCg -3'
miRNA:   3'- -GCGGCG-----CGA--GCGGG--UGAUCGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 85380 0.74 0.361086
Target:  5'- uGCUGCGaCUCGCCCAgcgGGUcggCCAGCu -3'
miRNA:   3'- gCGGCGC-GAGCGGGUga-UCGa--GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 16291 0.74 0.368636
Target:  5'- gCGCCGUGggUGCCUACcGGC-CCGGCg -3'
miRNA:   3'- -GCGGCGCgaGCGGGUGaUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 86538 0.74 0.376294
Target:  5'- aCGCCGUGC-CGCCCc---GCUCCAcGCg -3'
miRNA:   3'- -GCGGCGCGaGCGGGugauCGAGGU-CG- -5'
14607 5' -60.9 NC_003521.1 + 63093 0.74 0.384059
Target:  5'- cCGgCGCGCU-GCCCGCc--CUCCAGCa -3'
miRNA:   3'- -GCgGCGCGAgCGGGUGaucGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 130008 0.73 0.41616
Target:  5'- gGCgGCGCgcaaCGgCCGCUGGCUuUCAGCg -3'
miRNA:   3'- gCGgCGCGa---GCgGGUGAUCGA-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 153449 0.73 0.421944
Target:  5'- cCGCCGC-CUCGUCCuccacCUcggccuccuccucgGGCUCCGGCu -3'
miRNA:   3'- -GCGGCGcGAGCGGGu----GA--------------UCGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 109510 0.73 0.424438
Target:  5'- gGUCGCGC-CGgCCGCU-GCUCgAGCa -3'
miRNA:   3'- gCGGCGCGaGCgGGUGAuCGAGgUCG- -5'
14607 5' -60.9 NC_003521.1 + 39691 0.73 0.432814
Target:  5'- aCGCCGUGCgccagauggUGCCCAUggcuUGGUauUCCAGCu -3'
miRNA:   3'- -GCGGCGCGa--------GCGGGUG----AUCG--AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 239918 0.73 0.432814
Target:  5'- aCGCCGUGCgccagauggUGCCCAUggcuUGGUauUCCAGCu -3'
miRNA:   3'- -GCGGCGCGa--------GCGGGUG----AUCG--AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 148819 0.73 0.432814
Target:  5'- cCGCCGCGcCUCG-CCGCUcccGCUCCGuucGCg -3'
miRNA:   3'- -GCGGCGC-GAGCgGGUGAu--CGAGGU---CG- -5'
14607 5' -60.9 NC_003521.1 + 19828 0.72 0.441285
Target:  5'- aCGCUGgccaccuacaCGUUCGCCCGCgacguggAGCUgCAGCg -3'
miRNA:   3'- -GCGGC----------GCGAGCGGGUGa------UCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 225775 0.72 0.441285
Target:  5'- cCGCuCGCGCUCGCgCCGCUcgucagGGUgCCAGg -3'
miRNA:   3'- -GCG-GCGCGAGCG-GGUGA------UCGaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 163835 0.72 0.449849
Target:  5'- uGCCGUGCcUGCCCAUc-GCcgCCAGCa -3'
miRNA:   3'- gCGGCGCGaGCGGGUGauCGa-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 140233 0.72 0.449849
Target:  5'- uCGCCGC-CUCGUCCACcGGCcCCuacGGCg -3'
miRNA:   3'- -GCGGCGcGAGCGGGUGaUCGaGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 96553 0.72 0.458504
Target:  5'- uCGCCGUGCUCGCCCAgCagacaggcguggUAGCUgaUCuGCg -3'
miRNA:   3'- -GCGGCGCGAGCGGGU-G------------AUCGA--GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 150702 0.72 0.458504
Target:  5'- uGCUGCGCcggCGgCgACUGGCUCuCGGCc -3'
miRNA:   3'- gCGGCGCGa--GCgGgUGAUCGAG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.