Results 21 - 40 of 353 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14607 | 5' | -60.9 | NC_003521.1 | + | 99008 | 0.66 | 0.817158 |
Target: 5'- -aCCGCGgUCGUCUugUagacgauggcgccGGCUCCGGg -3' miRNA: 3'- gcGGCGCgAGCGGGugA-------------UCGAGGUCg -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 76000 | 0.66 | 0.787816 |
Target: 5'- gCGCCGUcaGCacguagaagacucggUCGCCCACcgacggcAGCUCCucggAGCg -3' miRNA: 3'- -GCGGCG--CG---------------AGCGGGUGa------UCGAGG----UCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 30963 | 0.66 | 0.817971 |
Target: 5'- aGCCagGCGCUCGgCaCGC-AGCagCAGCu -3' miRNA: 3'- gCGG--CGCGAGCgG-GUGaUCGagGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 123400 | 0.66 | 0.822817 |
Target: 5'- gGCCGCGCggacccgagaugcCGCCCuccACccGGUgCCAGCa -3' miRNA: 3'- gCGGCGCGa------------GCGGG---UGa-UCGaGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 206885 | 0.66 | 0.809775 |
Target: 5'- uCGCCGCGCaCGCCgCAC-AGC---AGCa -3' miRNA: 3'- -GCGGCGCGaGCGG-GUGaUCGaggUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 234428 | 0.66 | 0.826016 |
Target: 5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3' miRNA: 3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 165660 | 0.66 | 0.809775 |
Target: 5'- aCGCCGCGCg-GCaCCAU--GCgUCCAGg -3' miRNA: 3'- -GCGGCGCGagCG-GGUGauCG-AGGUCg -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 43570 | 0.66 | 0.801437 |
Target: 5'- gCGCCGCGUcaaGCaCCGCUc-CUCgGGCg -3' miRNA: 3'- -GCGGCGCGag-CG-GGUGAucGAGgUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 148855 | 0.66 | 0.809775 |
Target: 5'- uGCCGUGCaccgCGCCaGCUAcg-CCAGCc -3' miRNA: 3'- gCGGCGCGa---GCGGgUGAUcgaGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 135371 | 0.66 | 0.817971 |
Target: 5'- cCGCgGCGguuaUCGCCCGCgGGCgCCAa- -3' miRNA: 3'- -GCGgCGCg---AGCGGGUGaUCGaGGUcg -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 53756 | 0.66 | 0.809775 |
Target: 5'- -aCCGCGCccucCGCUCGCUGGCacccuUCCcGCc -3' miRNA: 3'- gcGGCGCGa---GCGGGUGAUCG-----AGGuCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 153668 | 0.66 | 0.822817 |
Target: 5'- gGCCGCGCgcacgaacugCGCCCGCccaacaccucgcGCUCCuugggacGCg -3' miRNA: 3'- gCGGCGCGa---------GCGGGUGau----------CGAGGu------CG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 194552 | 0.66 | 0.817971 |
Target: 5'- uGCCGCGUcgggCGCCUcgucgaaaUAGCUUgGGCc -3' miRNA: 3'- gCGGCGCGa---GCGGGug------AUCGAGgUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 56905 | 0.66 | 0.817971 |
Target: 5'- gGCCGuCGCgacaGCgCCGC-AGCaccgccUCCAGCa -3' miRNA: 3'- gCGGC-GCGag--CG-GGUGaUCG------AGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 145651 | 0.66 | 0.801437 |
Target: 5'- gCGCCgaGCGCgaggugcccUCgGCCCGCgAGUUCCuGCu -3' miRNA: 3'- -GCGG--CGCG---------AG-CGGGUGaUCGAGGuCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 89010 | 0.66 | 0.801437 |
Target: 5'- uGCCGCGggC-CCCACcGGCgccaCGGCg -3' miRNA: 3'- gCGGCGCgaGcGGGUGaUCGag--GUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 179236 | 0.66 | 0.810601 |
Target: 5'- cCGCCGCGg--GCCUuCUGGCgccugaacucgccggCCAGCa -3' miRNA: 3'- -GCGGCGCgagCGGGuGAUCGa--------------GGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 115103 | 0.66 | 0.817971 |
Target: 5'- gCGCCGuCGC-CGCCCcCgucGUgaccgCCGGCg -3' miRNA: 3'- -GCGGC-GCGaGCGGGuGau-CGa----GGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 195944 | 0.66 | 0.817971 |
Target: 5'- aGCCGUcCUgCGUgggCCACaGGCUCUGGCa -3' miRNA: 3'- gCGGCGcGA-GCG---GGUGaUCGAGGUCG- -5' |
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14607 | 5' | -60.9 | NC_003521.1 | + | 222268 | 0.66 | 0.801437 |
Target: 5'- aGCUGCGCgcgcgugauggUGCCCAg-AGCcccgugCCAGCg -3' miRNA: 3'- gCGGCGCGa----------GCGGGUgaUCGa-----GGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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