miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 113025 0.66 0.78436
Target:  5'- gGCaCGUGCUggugCGCCUcuuucacaaacGCgccguGCUCCAGCa -3'
miRNA:   3'- gCG-GCGCGA----GCGGG-----------UGau---CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 198258 0.66 0.801437
Target:  5'- aCGCCGCaGCgauagcCGuCCCAgcGGCaCCAGCa -3'
miRNA:   3'- -GCGGCG-CGa-----GC-GGGUgaUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 223177 0.66 0.801437
Target:  5'- uGCCccgGUGCUgGCgUACgUAGCUCCgcAGCg -3'
miRNA:   3'- gCGG---CGCGAgCGgGUG-AUCGAGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 89010 0.66 0.801437
Target:  5'- uGCCGCGggC-CCCACcGGCgccaCGGCg -3'
miRNA:   3'- gCGGCGCgaGcGGGUGaUCGag--GUCG- -5'
14607 5' -60.9 NC_003521.1 + 223823 0.66 0.781755
Target:  5'- cCGCCGCcaccGCgggCGCCUGCUGucccugcggcugcuGCUgCGGCu -3'
miRNA:   3'- -GCGGCG----CGa--GCGGGUGAU--------------CGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 141116 0.66 0.792963
Target:  5'- gGcCCGCGCagcuucugCGCCCGCgacaccuGUUUCGGCc -3'
miRNA:   3'- gC-GGCGCGa-------GCGGGUGau-----CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 43570 0.66 0.801437
Target:  5'- gCGCCGCGUcaaGCaCCGCUc-CUCgGGCg -3'
miRNA:   3'- -GCGGCGCGag-CG-GGUGAucGAGgUCG- -5'
14607 5' -60.9 NC_003521.1 + 121681 0.66 0.78436
Target:  5'- aCGUCGgGCUCcuUCCACUGGUUCU-GCu -3'
miRNA:   3'- -GCGGCgCGAGc-GGGUGAUCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 130368 0.66 0.792963
Target:  5'- gCGCCGUGCgCGCUCA---GCgccaCCGGCg -3'
miRNA:   3'- -GCGGCGCGaGCGGGUgauCGa---GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 163961 0.66 0.78436
Target:  5'- gGCCGCGgaCGCCgAagaUGGCggucgCCGGg -3'
miRNA:   3'- gCGGCGCgaGCGGgUg--AUCGa----GGUCg -5'
14607 5' -60.9 NC_003521.1 + 72994 0.66 0.775636
Target:  5'- cCGCgGCGgUCguGCCCGgggGGgUCCAGCu -3'
miRNA:   3'- -GCGgCGCgAG--CGGGUga-UCgAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 224863 0.66 0.78436
Target:  5'- gGCCGUagcgcgccaGCUCGUCCAggugcUUGGCgcaCAGCa -3'
miRNA:   3'- gCGGCG---------CGAGCGGGU-----GAUCGag-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 145651 0.66 0.801437
Target:  5'- gCGCCgaGCGCgaggugcccUCgGCCCGCgAGUUCCuGCu -3'
miRNA:   3'- -GCGG--CGCG---------AG-CGGGUGaUCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 202584 0.66 0.801437
Target:  5'- gGCCGCGuCUCGCCCcgcccGCcgaGGCcgcCCuGCg -3'
miRNA:   3'- gCGGCGC-GAGCGGG-----UGa--UCGa--GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 222268 0.66 0.801437
Target:  5'- aGCUGCGCgcgcgugauggUGCCCAg-AGCcccgugCCAGCg -3'
miRNA:   3'- gCGGCGCGa----------GCGGGUgaUCGa-----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 76000 0.66 0.787816
Target:  5'- gCGCCGUcaGCacguagaagacucggUCGCCCACcgacggcAGCUCCucggAGCg -3'
miRNA:   3'- -GCGGCG--CG---------------AGCGGGUGa------UCGAGG----UCG- -5'
14607 5' -60.9 NC_003521.1 + 202249 0.66 0.775636
Target:  5'- gCGUCGCGCcccacaacUCGUCCGCU-GCUaCCuGUg -3'
miRNA:   3'- -GCGGCGCG--------AGCGGGUGAuCGA-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 234428 0.66 0.826016
Target:  5'- -cCCGuCGC-CGCCgCGgUAGCUgCGGCg -3'
miRNA:   3'- gcGGC-GCGaGCGG-GUgAUCGAgGUCG- -5'
14607 5' -60.9 NC_003521.1 + 104184 0.66 0.781755
Target:  5'- uCGCCGcCGCcccgCGCCCguggccgauuacguGCUgcugcAGC-CCAGCg -3'
miRNA:   3'- -GCGGC-GCGa---GCGGG--------------UGA-----UCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 35463 0.66 0.801437
Target:  5'- uGCCGCGCaggUCGUgCAC-GGCg-CAGCu -3'
miRNA:   3'- gCGGCGCG---AGCGgGUGaUCGagGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.