miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 228460 0.71 0.503041
Target:  5'- gGCCggaggguaGCGaCUCGCCCACcacGC-CCAGCa -3'
miRNA:   3'- gCGG--------CGC-GAGCGGGUGau-CGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 130008 0.73 0.41616
Target:  5'- gGCgGCGCgcaaCGgCCGCUGGCUuUCAGCg -3'
miRNA:   3'- gCGgCGCGa---GCgGGUGAUCGA-GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 109510 0.73 0.424438
Target:  5'- gGUCGCGC-CGgCCGCU-GCUCgAGCa -3'
miRNA:   3'- gCGGCGCGaGCgGGUGAuCGAGgUCG- -5'
14607 5' -60.9 NC_003521.1 + 239918 0.73 0.432814
Target:  5'- aCGCCGUGCgccagauggUGCCCAUggcuUGGUauUCCAGCu -3'
miRNA:   3'- -GCGGCGCGa--------GCGGGUG----AUCG--AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 225775 0.72 0.441285
Target:  5'- cCGCuCGCGCUCGCgCCGCUcgucagGGUgCCAGg -3'
miRNA:   3'- -GCG-GCGCGAGCG-GGUGA------UCGaGGUCg -5'
14607 5' -60.9 NC_003521.1 + 150702 0.72 0.458504
Target:  5'- uGCUGCGCcggCGgCgACUGGCUCuCGGCc -3'
miRNA:   3'- gCGGCGCGa--GCgGgUGAUCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 118096 0.72 0.467247
Target:  5'- gGCgGCGCcgUCGCCCACgaccacgaccGCcUCCAGCc -3'
miRNA:   3'- gCGgCGCG--AGCGGGUGau--------CG-AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 142238 0.72 0.467247
Target:  5'- uCGCUGCGCUCgcggGCCCGCUc-CUCCucGGCc -3'
miRNA:   3'- -GCGGCGCGAG----CGGGUGAucGAGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 47156 0.72 0.475189
Target:  5'- cCGCCGCGCUUGCCgACgAGCacgaugaUCUgauAGCg -3'
miRNA:   3'- -GCGGCGCGAGCGGgUGaUCG-------AGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 63093 0.74 0.384059
Target:  5'- cCGgCGCGCU-GCCCGCc--CUCCAGCa -3'
miRNA:   3'- -GCgGCGCGAgCGGGUGaucGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 124476 0.75 0.331268
Target:  5'- cCGCCGCGCUCGCgguccguCCGCgucagcAGCUCuUGGCa -3'
miRNA:   3'- -GCGGCGCGAGCG-------GGUGa-----UCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 80503 0.75 0.318078
Target:  5'- -aCCGCGC-CGCCCAC-GGCUCCgauGGCc -3'
miRNA:   3'- gcGGCGCGaGCGGGUGaUCGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 191155 0.79 0.172013
Target:  5'- gCGCCGCGCUCGCCCgGCcccuCUCCAGa -3'
miRNA:   3'- -GCGGCGCGAGCGGG-UGauc-GAGGUCg -5'
14607 5' -60.9 NC_003521.1 + 57409 0.79 0.178674
Target:  5'- gCGCCGUGCggUCGCCCACcgucucgcggacgGGCUCCuGCa -3'
miRNA:   3'- -GCGGCGCG--AGCGGGUGa------------UCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 226852 0.78 0.222585
Target:  5'- gCGCCGgGCagGCCCAUcagGGCgUCCAGCg -3'
miRNA:   3'- -GCGGCgCGagCGGGUGa--UCG-AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 144946 0.77 0.251761
Target:  5'- uCGCCGCGCUgGCUCGCgacgaagGGCUgcgcgacauccugagCCAGCg -3'
miRNA:   3'- -GCGGCGCGAgCGGGUGa------UCGA---------------GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 92372 0.76 0.279037
Target:  5'- cCGUC-CGCUCGCCCGCUGccgucGCUCCgccGGCu -3'
miRNA:   3'- -GCGGcGCGAGCGGGUGAU-----CGAGG---UCG- -5'
14607 5' -60.9 NC_003521.1 + 128066 0.76 0.29161
Target:  5'- gCGCCGCGCgaugcCGCCCaugggcucgcGCUGGaagcgcgaCUCCAGCa -3'
miRNA:   3'- -GCGGCGCGa----GCGGG----------UGAUC--------GAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 120042 0.76 0.298062
Target:  5'- gGUCGCGCUCGCCCACc-GCg-CAGUg -3'
miRNA:   3'- gCGGCGCGAGCGGGUGauCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 224727 0.75 0.311295
Target:  5'- cCGUgGUGCUCGCCgACgcaGGCggCCAGCg -3'
miRNA:   3'- -GCGgCGCGAGCGGgUGa--UCGa-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.