miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 5' -60.9 NC_003521.1 + 2021 0.66 0.775636
Target:  5'- gCGUCGCGCcccacaacUCGUCCGCU-GCUaCCuGUg -3'
miRNA:   3'- -GCGGCGCG--------AGCGGGUGAuCGA-GGuCG- -5'
14607 5' -60.9 NC_003521.1 + 2112 0.66 0.809775
Target:  5'- uGCCgGUGCUaccuccucuggucaaCGuCCCACggccgccgaccuGCUCCAGCa -3'
miRNA:   3'- gCGG-CGCGA---------------GC-GGGUGau----------CGAGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 2610 0.7 0.568267
Target:  5'- aCGCCGUGCcgaCGCCCA--GGCUCuUGGCc -3'
miRNA:   3'- -GCGGCGCGa--GCGGGUgaUCGAG-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 2728 0.69 0.654658
Target:  5'- gCGCCGUcaccGcCUCGCUgGCUGGCUgCuGCu -3'
miRNA:   3'- -GCGGCG----C-GAGCGGgUGAUCGAgGuCG- -5'
14607 5' -60.9 NC_003521.1 + 4381 0.66 0.826016
Target:  5'- gCGUCcCGCUCGCUCACUcacccGCUCguGg -3'
miRNA:   3'- -GCGGcGCGAGCGGGUGAu----CGAGguCg -5'
14607 5' -60.9 NC_003521.1 + 6630 0.67 0.721172
Target:  5'- gGCCGCGCgcgaacgcuUgGCCCGCUuGCgacguugCCAGa -3'
miRNA:   3'- gCGGCGCG---------AgCGGGUGAuCGa------GGUCg -5'
14607 5' -60.9 NC_003521.1 + 6745 0.66 0.809775
Target:  5'- aGCCaGCGCUCGCCgAgUcccagGGCgUCCauGGCc -3'
miRNA:   3'- gCGG-CGCGAGCGGgUgA-----UCG-AGG--UCG- -5'
14607 5' -60.9 NC_003521.1 + 7489 0.68 0.683404
Target:  5'- uCGCCGgGUUC-CCCAUaagUAGCguaCAGCg -3'
miRNA:   3'- -GCGGCgCGAGcGGGUG---AUCGag-GUCG- -5'
14607 5' -60.9 NC_003521.1 + 8288 0.68 0.683404
Target:  5'- gGCCaC-CUCGCCCagaaACUGGCgcuccgaagUCCAGCg -3'
miRNA:   3'- gCGGcGcGAGCGGG----UGAUCG---------AGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 12395 0.66 0.826016
Target:  5'- aCGCCGaGUUCGUgCUGCUGGCUgaCCGGg -3'
miRNA:   3'- -GCGGCgCGAGCG-GGUGAUCGA--GGUCg -5'
14607 5' -60.9 NC_003521.1 + 15713 0.68 0.711812
Target:  5'- uGCUGuCGCUCGgcauCCCgcacaACUGGUUCCuGCa -3'
miRNA:   3'- gCGGC-GCGAGC----GGG-----UGAUCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 16264 0.72 0.484986
Target:  5'- gGCUGCGCU-G-CCGCUGGUUCCuGCu -3'
miRNA:   3'- gCGGCGCGAgCgGGUGAUCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 16291 0.74 0.368636
Target:  5'- gCGCCGUGggUGCCUACcGGC-CCGGCg -3'
miRNA:   3'- -GCGGCGCgaGCGGGUGaUCGaGGUCG- -5'
14607 5' -60.9 NC_003521.1 + 16386 0.69 0.654658
Target:  5'- aCGCaccuggacCGCUCGCCCACcacgcAGCgccuggCCGGCg -3'
miRNA:   3'- -GCGgc------GCGAGCGGGUGa----UCGa-----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 16989 0.66 0.792108
Target:  5'- aGCCGCagggacaGCaggCGCCCGCggUGGCggCGGCg -3'
miRNA:   3'- gCGGCG-------CGa--GCGGGUG--AUCGagGUCG- -5'
14607 5' -60.9 NC_003521.1 + 17418 0.68 0.702393
Target:  5'- aCGCCGCGCcggggCGCCaCAC-GGC-CC-GCg -3'
miRNA:   3'- -GCGGCGCGa----GCGG-GUGaUCGaGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 18028 0.68 0.711812
Target:  5'- aGCCGCGCUaccaCGUgCAgaAGUUCCucuGCg -3'
miRNA:   3'- gCGGCGCGA----GCGgGUgaUCGAGGu--CG- -5'
14607 5' -60.9 NC_003521.1 + 18567 0.68 0.662346
Target:  5'- aCGCgCGCGCagcuggagagcgCGCUCgACUGGUUCCuGCg -3'
miRNA:   3'- -GCG-GCGCGa-----------GCGGG-UGAUCGAGGuCG- -5'
14607 5' -60.9 NC_003521.1 + 18927 0.66 0.809775
Target:  5'- gCGCCGCGCgccggcaaucCGCCCcACacGCccuacCCAGCg -3'
miRNA:   3'- -GCGGCGCGa---------GCGGG-UGauCGa----GGUCG- -5'
14607 5' -60.9 NC_003521.1 + 18981 0.7 0.568267
Target:  5'- gGUgGUGgaCGCCCAC-AGCggCCAGCu -3'
miRNA:   3'- gCGgCGCgaGCGGGUGaUCGa-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.